PDBsum entry 9msh Go to PDB code:  Pore analysis for: 9msh calculated with MOLE 2.0 PDB id 9msh Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   26 pores, coloured by radius 24 pores, coloured by radius 24 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.85 1.84 59.7 -1.73 -0.29 25.4 80 6 5 1 5 4 2 0   2 2.45 3.17 76.8 -2.36 -0.44 28.9 82 12 7 4 5 4 1 0  DA 66 U DA 67 U 3 1.85 1.84 87.6 -1.91 -0.62 21.8 81 10 5 1 2 1 2 0  DG 61 U DA 62 U DC 64 U DA 65 U DA 66 U DA 21 V DT 22 V DT 23 V DT 24 V DT 25 V DT 26 V DG 27 V 4 1.60 3.44 90.8 -1.28 -0.34 23.0 79 6 6 0 5 2 1 0  DT 70 U DG 71 U DG 72 U DT 26 V 5 3.52 3.52 93.1 -2.16 -0.64 22.1 81 13 4 4 2 1 1 0  DG 61 U DA 62 U DC 64 U DA 65 U DA 66 U DA 67 U DT 22 V DT 23 V DT 24 V DT 25 V DT 26 V DG 27 V 6 3.21 3.21 97.7 -1.63 -0.70 16.5 83 11 3 4 1 1 1 0  POP 1401 I DG 61 U DA 62 U DA 63 U DC 64 U DT 26 V DG 27 V 7 1.59 2.62 99.0 -1.30 -0.54 17.3 88 7 8 8 5 0 1 0  POP 1401 I DA 63 U 8 2.54 3.15 108.7 -1.90 -0.45 23.2 81 12 4 2 3 5 2 0  DG 61 U DA 62 U DC 64 U DA 65 U DA 66 U DA 21 V DT 22 V DT 23 V DT 24 V DT 25 V DT 26 V DG 27 V 9 1.67 3.57 115.7 -1.76 -0.46 24.6 79 10 12 2 7 3 3 0  DG 72 U DA 21 V DT 22 V DT 23 V 10 1.67 2.79 118.6 -1.42 -0.53 18.4 84 12 7 4 4 1 2 0  DG 61 U DA 62 U DA 63 U DC 64 U DT 70 U DT 26 V DG 27 V 11 1.67 2.76 120.4 -1.67 -0.51 23.0 86 12 10 6 6 0 3 0  DA 63 U DC 64 U DA 65 U DA 66 U DA 21 V DT 22 V DT 23 V 12 1.58 3.51 123.1 -1.90 -0.48 24.6 80 13 8 5 6 3 1 0  DA 66 U DA 67 U DG 72 U DT 22 V DT 23 V 13 1.52 2.74 125.9 -1.74 -0.51 22.1 85 15 9 8 6 0 2 0  DA 63 U DC 64 U DA 65 U DA 66 U DA 67 U DT 22 V DT 23 V 14 1.65 3.46 132.1 -1.67 -0.35 24.0 79 11 10 3 8 7 3 0  DG 72 U DA 21 V DT 22 V DT 23 V 15 1.82 1.85 135.5 -1.99 -0.68 22.1 83 16 7 7 4 0 4 0  POP 1401 I DA 63 U DC 64 U DA 65 U DA 66 U DA 21 V DT 22 V DT 23 V 16 1.66 3.56 140.4 -1.52 -0.53 20.0 83 9 7 6 5 3 0 0  POP 1401 I DA 63 U DC 64 U DA 65 U DG 72 U DT 23 V 17 1.61 3.45 151.3 -1.25 -0.38 20.7 83 9 10 4 8 3 1 0  DA 63 U DC 64 U DA 65 U DG 72 U DT 23 V 18 2.11 2.11 168.4 -1.95 -0.69 18.5 83 12 8 14 2 3 5 0  POP 1401 I MG 1501 J DT 33 U DT 34 U DG 35 U DG 36 U DC 37 U DG 31 V DT 32 V DT 33 V DG 34 V DT 35 V DA 36 V DT 50 V DA 58 V DT 59 V DT 60 V DT 61 V DC 62 V 19 1.52 1.84 170.5 -2.09 -0.53 23.8 86 20 12 18 12 4 3 0  POP 1401 I MG 1501 J DG 31 V DT 32 V DT 33 V DG 34 V DT 35 V 20 1.19 3.00 168.6 -0.85 -0.26 18.6 83 10 10 7 12 4 1 0  DA 63 U DC 64 U DA 65 U DG 72 U DT 23 V 21 2.02 2.02 188.4 -1.77 -0.63 17.8 80 13 9 10 4 4 6 0  DT 33 U DT 34 U DG 35 U DG 36 U DC 37 U DG 61 U DT 26 V DG 27 V DT 28 V DC 30 V DT 32 V DT 33 V DG 34 V DT 35 V DA 36 V DT 50 V DT 59 V DT 60 V DT 61 V DC 62 V 22 1.53 1.85 191.7 -1.98 -0.49 23.0 84 22 12 14 13 5 4 0  DG 61 U DT 26 V DG 27 V DT 28 V DC 30 V DT 32 V DT 33 V DG 34 V DT 35 V 23 1.67 1.93 223.1 -1.88 -0.54 21.2 82 18 12 14 8 7 3 0  DT 33 U DT 34 U DG 35 U DG 36 U DC 37 U DT 50 V DT 59 V DT 60 V DT 61 V DC 62 V 24 1.16 3.11 264.2 -1.42 -0.50 18.5 87 27 16 21 21 1 3 1  POP 1401 I DA 63 U DC 64 U DA 65 U DA 66 U DA 67 U DT 22 V DT 23 V DG 31 V DT 32 V DT 33 V DG 34 V DT 35 V Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.