PDBsum entry 9md1

Pore analysis for: 9md1 calculated with

MOLE 2.0

PDB id

9md1

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

8 pores, coloured by radius

13 pores, coloured by radius

13 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.37

3.67

29.5

-1.38

-0.55

8.8

88

3

0

6

0

2

0

0

2

1.08

2.92

30.3

1.09

0.05

3.4

80

1

1

2

8

0

0

0

3

1.82

1.91

36.2

-0.74

-0.01

10.8

72

3

2

1

4

4

1

0

4

1.11

2.12

56.0

1.66

0.97

3.3

74

0

2

2

13

6

1

0

YLX 501 R

5

2.39

2.51

55.8

0.82

0.58

6.5

72

3

3

2

10

6

1

0

6

1.79

1.88

59.9

-1.91

-0.45

23.8

82

6

4

3

1

3

1

0

7

1.80

1.89

61.1

-0.96

-0.39

13.2

85

3

2

4

5

2

0

0

CLR 502 C

8

1.16

2.08

65.7

-0.56

-0.12

10.0

87

3

4

5

5

3

0

0

YLX 501 R CLR 502 R

9

1.18

1.55

68.2

-1.73

-0.42

22.2

82

7

5

2

3

3

0

0

10

1.17

2.08

72.0

-0.53

0.16

16.9

83

5

4

2

6

4

0

0

YLX 501 R

11

2.37

3.67

72.3

-0.96

-0.28

16.8

83

5

4

7

3

2

1

4

12

1.72

1.73

75.1

-1.46

-0.34

20.9

86

5

4

4

6

3

1

0

13

1.16

1.47

95.9

1.04

0.73

9.0

74

5

2

1

12

7

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.