PDBsum entry 9m54

Pore analysis for: 9m54 calculated with

MOLE 2.0

PDB id

9m54

Pores calculated on whole structure

Pores calculated excluding ligands

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12 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.25

1.35

31.0

1.06

0.51

3.6

79

1

0

3

6

2

2

0

2

2.53

2.57

31.3

-1.39

-0.46

19.9

88

4

3

2

2

1

0

0

3

2.22

2.90

31.8

-0.66

-0.48

15.4

88

2

3

1

3

0

0

0

4

1.19

1.55

32.3

1.40

0.53

3.3

85

1

0

2

9

2

0

0

5

2.27

4.06

47.2

-1.32

-0.36

18.5

81

6

3

5

3

2

2

3

6

1.58

1.68

47.2

-1.58

-0.24

15.4

77

3

2

3

2

3

0

0

7

1.26

1.46

53.4

-0.03

0.14

9.2

87

4

2

4

7

4

0

0

8

1.74

2.09

59.9

-1.74

-0.36

21.3

90

6

4

5

6

1

1

0

9

2.08

3.74

65.1

-2.03

-0.58

26.6

84

9

8

2

4

1

1

0

10

0.77

2.29

86.3

-1.66

-0.47

18.8

86

11

7

8

6

5

1

0

11

1.20

1.93

136.6

0.91

0.49

2.7

80

1

0

6

18

8

2

0

12

1.23

2.01

156.4

-0.15

0.04

7.5

83

4

3

11

14

8

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.