PDBsum entry 9lyd Go to PDB code:  Pore analysis for: 9lyd calculated with MOLE 2.0 PDB id 9lyd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   27 pores, coloured by radius 27 pores, coloured by radius 27 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.23 1.28 28.0 0.93 0.60 8.5 59 1 1 0 4 4 0 1   2 1.81 3.46 29.2 0.54 0.23 11.4 83 3 1 1 8 1 0 0   3 1.23 1.23 31.2 2.20 0.56 1.1 63 0 0 0 12 3 0 0   4 1.32 1.37 31.7 1.32 0.54 6.2 62 1 1 0 7 3 0 1   5 1.24 1.90 32.5 1.02 0.55 8.9 72 1 0 1 7 5 0 0   6 2.70 3.66 33.0 -0.20 -0.11 10.4 84 3 0 3 6 1 2 1   7 1.23 1.28 35.0 0.34 0.36 11.3 70 1 2 1 7 3 1 1   8 1.23 1.23 36.0 2.07 0.57 4.8 69 1 1 0 12 2 0 1   9 1.40 1.60 40.0 0.37 0.55 7.2 69 1 2 1 7 4 1 0   10 1.21 1.77 41.4 1.73 0.68 9.3 68 2 1 1 11 4 0 1   11 1.21 1.77 41.9 1.67 0.81 8.3 65 2 0 1 10 5 0 0   12 1.22 1.63 47.6 1.10 0.26 4.7 82 1 1 4 16 2 1 0   13 1.34 1.33 51.4 1.93 0.56 3.8 70 1 1 0 17 5 0 1   14 1.45 1.63 51.9 1.86 0.59 2.6 68 1 0 0 16 6 0 0   15 1.08 1.17 54.6 -0.10 0.06 9.9 79 1 2 2 6 1 2 2   16 1.22 1.22 55.6 2.02 0.49 1.1 73 0 0 0 19 4 0 0   17 2.12 3.68 58.2 -0.14 -0.04 16.3 86 7 1 6 8 0 2 0   18 1.24 1.28 59.0 2.30 0.77 4.3 74 2 1 1 21 5 0 1   19 1.44 1.63 60.3 -0.45 0.35 13.1 66 2 2 0 6 3 2 2   20 1.20 3.52 60.9 0.74 0.39 11.5 83 5 1 3 15 3 1 0   21 1.34 1.34 61.6 -0.05 0.31 12.4 69 2 3 0 7 3 2 3   22 1.39 1.60 65.6 2.09 0.82 3.5 73 2 1 1 21 7 0 0   23 2.34 4.20 72.2 0.89 0.56 7.9 72 2 2 0 12 6 2 2   24 1.27 1.32 76.7 0.68 0.51 11.1 68 3 2 0 10 5 2 2   25 1.23 1.28 78.6 -0.90 0.03 20.5 75 3 3 0 6 3 2 1   26 1.39 1.60 83.6 -0.85 0.14 17.5 74 3 3 0 6 4 2 0   27 1.21 1.94 218.5 1.09 0.38 6.6 80 7 5 5 40 3 4 2   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.