spacer
spacer

PDBsum entry 9ltk

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 9ltk calculated with MOLE 2.0 PDB id
9ltk
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
3 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.79 1.78 23.0 1.14 0.61 4.4 62 1 0 1 2 5 1 0  SO4 301 A GOL 311 A
2 1.76 1.76 23.3 -0.81 -0.13 15.9 71 4 1 1 2 4 1 0  GOL 311 A
3 1.84 1.86 24.0 0.88 0.58 3.8 68 1 0 2 3 6 1 0  SO4 301 A GOL 311 A
4 1.14 1.15 27.6 0.77 0.55 7.3 69 1 0 2 3 5 1 0  SO4 301 A GOL 311 A
5 1.14 1.15 27.9 -0.78 -0.06 16.3 75 4 1 2 3 4 1 0  GOL 311 A
6 1.14 1.15 28.6 0.69 0.58 5.5 72 1 0 3 4 6 1 0  SO4 301 A GOL 311 A
7 1.15 3.31 41.0 0.52 0.46 6.4 74 3 0 5 7 7 1 0  GOL 311 A SO4 301 B GOL 309 B
8 1.15 1.17 43.1 0.42 0.42 6.5 74 3 0 5 7 7 1 0  GOL 311 A SO4 301 B GOL 309 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer