spacer
spacer

PDBsum entry 9kqh

Go to PDB code: 
Top Page protein dna_rna ligands pores links
Pore analysis for: 9kqh calculated with MOLE 2.0 PDB id
9kqh
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
13 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.62 1.76 29.6 0.00 0.08 17.2 77 6 2 1 5 0 0 0  
2 1.47 1.63 47.8 -2.21 -0.53 28.0 76 10 4 3 2 4 0 0  
3 1.54 1.54 50.2 -1.16 -0.50 15.3 80 5 3 3 2 3 0 1  DT 12 B
4 1.46 1.64 62.0 -1.56 -0.37 24.8 79 12 5 3 5 3 0 0  
5 1.47 1.65 64.8 -1.47 -0.47 21.0 77 9 6 3 2 5 0 1  DT 12 B
6 1.47 1.66 65.1 -1.44 -0.31 24.4 77 13 4 4 7 3 0 0  
7 1.48 1.62 78.4 -1.05 -0.31 20.2 79 11 7 3 5 4 0 1  DT 12 B
8 1.46 1.63 81.4 -1.05 -0.26 20.9 77 12 6 4 7 4 0 1  DT 12 B
9 1.56 1.57 38.9 -1.90 -0.75 22.1 91 3 3 4 1 0 0 0  DT 4 B DT 5 B DT 6 B DT 7 B DT 8 B DT 9 B
10 1.64 2.73 40.2 -0.57 -0.28 13.8 85 6 2 3 7 2 0 0  ANP 801 A
11 1.61 2.65 40.6 -1.55 -0.38 21.5 87 6 4 4 5 1 1 0  ANP 801 A
12 1.66 3.01 42.9 -0.70 -0.34 12.9 85 5 1 3 5 2 0 0  DT 7 B DT 8 B DT 9 B
13 1.67 2.86 43.2 -1.74 -0.45 21.1 87 5 3 4 3 1 1 0  DT 7 B DT 8 B DT 9 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer