PDBsum entry 9kpd Go to PDB code:  Tunnel analysis for: 9kpd calculated with MOLE 2.0 PDB id 9kpd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.57 32.1 0.78 0.09 5.6 78 1 1 3 6 2 0 1   2 1.27 1.56 37.1 1.01 0.16 4.3 83 1 0 6 10 1 0 1   3 1.29 1.52 56.2 -0.56 -0.01 18.1 82 7 2 5 8 2 0 1   4 1.30 1.52 56.6 1.10 0.46 9.1 80 4 0 4 14 3 0 1   5 1.31 1.57 58.1 -0.67 0.07 18.2 75 8 1 4 8 4 1 1   6 1.21 3.02 22.4 -0.26 0.15 14.5 80 3 1 1 4 3 0 0  SA0 501 R 7 1.19 2.58 27.0 -0.08 0.30 14.0 82 2 1 3 4 3 0 0  SA0 501 R 8 1.52 1.55 15.8 -1.10 -0.02 17.7 69 2 0 1 2 1 2 0   9 1.52 1.53 18.3 -1.11 -0.10 17.4 74 3 1 1 1 3 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.