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PDBsum entry 9kbh

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 9kbh calculated with MOLE 2.0 PDB id
9kbh
Pores calculated on whole structure Pores calculated excluding ligands

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15 pores, coloured by radius 15 pores, coloured by radius 15 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.55 3.48 33.1 -1.81 -0.32 22.9 78 3 2 4 3 2 1 0  DA 1 H
2 2.04 2.05 35.5 -2.02 -0.53 20.1 89 5 1 5 3 0 1 0  ANP 601 A
3 2.21 2.24 41.2 -2.52 -0.38 29.5 82 7 2 3 1 2 1 0  DA 1 H
4 2.04 2.08 64.3 -1.23 -0.48 14.9 99 5 2 10 4 0 0 0  ANP 601 F DT 6 H
5 2.22 2.24 69.4 -1.90 -0.61 18.1 86 6 7 6 2 2 1 0  DT 5 H DT 6 H
6 2.20 2.25 70.2 -1.91 -0.46 21.4 81 9 4 8 4 4 2 0  DA 1 H
7 2.96 3.14 74.8 -2.25 -0.54 24.2 89 6 6 7 2 2 0 0  DA 1 H DT 5 H DT 6 H
8 2.95 3.14 87.4 -1.71 -0.47 18.9 91 7 5 10 4 2 0 0  DA 1 H DT 5 H DT 6 H
9 2.87 3.63 103.2 -1.96 -0.55 20.6 85 9 8 11 5 4 1 0  DA 1 H DT 5 H DT 6 H
10 2.76 2.76 115.9 -1.62 -0.26 22.1 84 12 4 6 8 2 2 0  DA 1 H
11 1.23 2.43 124.6 -1.53 -0.47 18.4 84 12 6 13 13 4 1 2  ANP 601 F DA 1 H
12 2.57 3.42 140.1 -1.63 -0.35 21.1 82 15 6 10 9 4 3 0  
13 1.20 1.19 148.6 -1.05 -0.27 15.2 80 14 4 13 11 6 3 2  ANP 601 D DA 1 H
14 1.26 2.67 188.1 -0.51 -0.12 12.6 82 8 5 11 13 4 1 1  ANP 601 F DT 6 H
15 1.22 1.42 210.8 -0.40 0.08 15.2 74 14 3 8 17 8 2 1  ANP 601 F

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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