PDBsum entry 9k1d

Pore analysis for: 9k1d calculated with

MOLE 2.0

PDB id

9k1d

Pores calculated on whole structure

Pores calculated excluding ligands

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4 pores, coloured by radius

5 pores, coloured by radius

5 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.81

2.10

31.0

-1.04

-0.50

15.2

82

4

3

2

4

0

1

0

2

1.83

2.11

38.3

-1.58

-0.58

19.3

79

6

3

2

4

1

2

0

3

1.19

1.22

41.1

-0.94

-0.05

16.8

75

4

1

4

6

3

1

1

4

2.39

2.54

41.9

-1.33

-0.43

16.8

77

6

2

4

2

3

2

2

5

1.17

1.36

32.6

-0.52

0.02

10.0

72

2

1

4

3

5

0

2

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.