PDBsum entry 9ja4 Go to PDB code:  Tunnel analysis for: 9ja4 calculated with MOLE 2.0 PDB id 9ja4 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 2.15 26.3 -1.55 -0.06 25.2 82 5 3 0 3 1 0 0   2 1.33 1.36 33.4 -2.57 -0.25 36.3 81 5 6 0 2 1 0 0   3 1.57 1.76 21.7 -1.55 0.00 16.5 65 4 0 2 1 5 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.