PDBsum entry 9ja1 Go to PDB code:  Pore analysis for: 9ja1 calculated with MOLE 2.0 PDB id 9ja1 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   31 pores, coloured by radius 31 pores, coloured by radius 31 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.76 1.90 29.0 -2.20 -0.53 26.7 77 5 3 2 1 1 1 0   2 2.11 2.45 42.8 -2.31 -0.44 32.5 81 8 6 3 3 1 0 0   3 1.77 1.88 73.4 -1.82 -0.35 24.6 77 13 7 5 5 3 1 0   4 1.17 1.51 82.0 -2.10 -0.55 24.7 80 15 4 6 5 2 1 0   5 1.57 1.92 89.9 -1.42 -0.18 18.7 80 9 6 9 10 6 2 0   6 1.97 2.13 95.8 -2.06 -0.31 27.9 82 9 12 3 7 3 2 0  MG 1803 A 7 1.36 1.60 111.6 -1.76 -0.24 22.2 81 14 4 6 11 4 0 1   8 1.47 2.31 116.0 -2.46 -0.38 30.7 82 11 10 4 9 1 2 1   9 3.41 3.51 115.6 -1.47 -0.48 18.9 82 13 9 7 10 1 2 0  DG 6 N DA 7 N DG 5 T DC 6 T DT 7 T DC 8 T DT 10 T 10 2.30 3.22 128.2 -2.06 -0.53 26.6 81 16 12 6 6 3 1 0  MG 1803 A DT 1 N DG 2 N DG 3 N 11 2.16 2.32 149.4 -1.91 -0.57 22.7 83 11 12 10 12 1 6 0  DG 5 T DC 6 T DT 7 T DC 8 T 12 1.48 1.99 152.9 -1.26 -0.21 15.3 78 10 7 9 8 5 5 0   13 1.97 1.97 151.5 -1.70 -0.59 21.4 81 17 10 5 8 1 2 0  MG 1803 A DG 6 N DA 7 N DA 8 N DG 9 N DG 10 N DA 11 N DC 8 T DT 10 T DT 11 T DC 12 T DT 13 T DC 14 T 14 2.36 2.35 156.7 -2.32 -0.58 27.8 84 18 12 10 6 2 2 0  MG 1803 A DT 1 N DG 2 N DG 3 N A 1 R U 2 R C 3 R G 4 R A 5 R DA 17 T DC 24 T DG 25 T DA 26 T 15 1.47 2.33 158.7 -2.22 -0.28 28.8 81 19 14 7 12 4 0 1   16 2.07 2.33 175.0 -1.82 -0.33 22.1 80 17 11 11 9 5 5 0   17 1.32 2.46 170.5 -2.05 -0.39 29.3 80 13 14 5 7 4 1 0  MG 1803 A 18 2.39 2.48 176.2 -1.57 -0.30 24.4 84 16 16 8 12 5 0 0  MG 1803 A 19 1.29 1.46 181.3 -2.25 -0.53 26.3 84 20 13 13 10 3 0 0  MG 1803 A DT 1 N DG 2 N DG 3 N A 1 R U 2 R C 3 R G 4 R A 5 R DA 17 T DC 24 T DG 25 T DA 26 T DT 27 T 20 1.28 2.37 194.2 -1.42 -0.43 19.3 81 13 11 8 10 2 3 0  DG 6 N DA 7 N DG 5 T DC 6 T DT 7 T DC 8 T DT 10 T 21 1.25 2.15 200.3 -1.99 -0.52 25.2 80 14 12 7 7 4 2 0  DT 1 N DG 2 N DG 3 N 22 2.38 2.35 202.6 -1.20 -0.33 18.9 83 16 15 11 15 5 2 0  DG 6 N DA 7 N DG 5 T DC 6 T DT 7 T DC 8 T DT 10 T 23 2.32 3.16 208.6 -1.54 -0.39 22.4 82 17 17 10 12 7 1 0  DT 1 N DG 2 N DG 3 N 24 2.07 2.07 213.6 -1.32 -0.40 19.8 83 15 12 7 11 5 0 0  DT 1 N DG 2 N DG 3 N DG 9 N DG 10 N DA 11 N DT 10 T DT 11 T DC 12 T DT 13 T DC 14 T 25 1.33 2.24 205.3 -1.70 -0.55 21.6 80 12 7 4 6 2 1 0  DT 1 N DG 2 N DG 3 N DG 9 N DG 10 N DA 11 N DT 10 T DT 11 T DC 12 T DT 13 T DC 14 T 26 2.24 2.23 241.7 -1.79 -0.42 24.2 84 20 18 14 12 6 2 0  DT 1 N DG 2 N DG 3 N A 1 R U 2 R C 3 R G 4 R A 5 R DA 17 T DC 24 T DG 25 T DA 26 T 27 1.18 2.27 233.4 -2.27 -0.56 27.2 83 17 14 11 7 3 3 0  DT 1 N DG 2 N DG 3 N A 1 R U 2 R C 3 R G 4 R A 5 R DA 17 T DC 24 T DG 25 T DA 26 T 28 1.54 2.31 241.6 -2.12 -0.55 24.9 82 22 14 12 16 2 5 1  DG 6 N DA 7 N DA 8 N DG 9 N DG 10 N DA 11 N DT 7 T DC 8 T DT 10 T DT 11 T DC 12 T DT 13 T DC 14 T 29 1.76 2.03 237.8 -1.54 -0.30 23.4 84 13 18 9 12 5 1 0   30 1.29 1.29 302.6 -1.92 -0.32 27.8 79 17 23 8 12 5 4 0   31 1.43 1.69 32.3 -0.62 -0.21 16.5 85 4 2 2 4 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.