 |
PDBsum entry 9itb
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 9itb calculated with MOLE 2.0
|
PDB id
|
|
|
|
9itb
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
14 pores,
coloured by radius |
 |
24 pores,
coloured by radius
|
24 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.16 |
2.41 |
29.4 |
-1.54 |
-0.53 |
21.3 |
86 |
 |
4 |
5 |
4 |
2 |
1 |
0 |
1 |
 |
|
 |
 |
2 |
 |
1.25 |
1.25 |
30.4 |
-2.14 |
-0.40 |
28.4 |
85 |
6 |
3 |
3 |
3 |
0 |
0 |
0 |
|
 |
3 |
 |
1.80 |
2.00 |
43.3 |
-0.88 |
-0.34 |
14.6 |
90 |
4 |
2 |
4 |
4 |
1 |
0 |
0 |
|
 |
4 |
 |
2.68 |
3.98 |
45.0 |
-1.46 |
-0.42 |
14.5 |
85 |
6 |
3 |
7 |
4 |
1 |
0 |
0 |
|
 |
5 |
 |
1.22 |
1.21 |
50.7 |
-1.17 |
-0.35 |
15.2 |
86 |
6 |
3 |
7 |
6 |
1 |
0 |
0 |
|
 |
6 |
 |
1.34 |
2.10 |
63.5 |
-0.40 |
-0.16 |
11.1 |
91 |
3 |
2 |
4 |
9 |
1 |
0 |
0 |
|
 |
7 |
 |
1.32 |
2.05 |
64.6 |
-0.38 |
-0.18 |
11.2 |
86 |
6 |
2 |
3 |
6 |
2 |
0 |
0 |
|
 |
8 |
 |
0.98 |
1.56 |
64.5 |
1.46 |
0.50 |
2.2 |
82 |
1 |
0 |
2 |
8 |
3 |
0 |
1 |
|
 |
9 |
 |
1.98 |
1.98 |
77.3 |
-1.33 |
-0.31 |
18.2 |
93 |
5 |
2 |
6 |
6 |
1 |
0 |
0 |
|
 |
10 |
 |
2.22 |
2.24 |
78.3 |
-1.30 |
-0.34 |
18.4 |
88 |
8 |
2 |
5 |
3 |
2 |
0 |
0 |
|
 |
11 |
 |
1.04 |
1.54 |
86.8 |
0.39 |
0.14 |
9.3 |
88 |
1 |
2 |
5 |
11 |
2 |
0 |
1 |
|
 |
12 |
 |
1.02 |
1.52 |
87.9 |
0.55 |
0.15 |
8.8 |
83 |
4 |
2 |
4 |
8 |
3 |
0 |
1 |
|
 |
13 |
 |
1.73 |
1.85 |
96.1 |
-1.46 |
-0.42 |
19.3 |
87 |
6 |
9 |
6 |
6 |
3 |
1 |
0 |
|
 |
14 |
 |
1.31 |
1.98 |
101.9 |
-0.77 |
-0.18 |
13.8 |
90 |
7 |
1 |
5 |
8 |
2 |
0 |
0 |
|
 |
15 |
 |
1.19 |
1.25 |
115.2 |
-1.56 |
-0.47 |
18.2 |
85 |
8 |
5 |
10 |
6 |
5 |
1 |
3 |
|
 |
16 |
 |
2.13 |
2.07 |
126.2 |
-1.73 |
-0.50 |
22.1 |
86 |
10 |
10 |
8 |
3 |
4 |
1 |
0 |
|
 |
17 |
 |
1.29 |
1.48 |
137.1 |
-0.69 |
-0.17 |
16.2 |
84 |
6 |
8 |
6 |
10 |
5 |
1 |
1 |
|
 |
18 |
 |
1.18 |
1.59 |
142.2 |
-1.76 |
-0.52 |
20.7 |
86 |
8 |
12 |
12 |
6 |
5 |
2 |
3 |
|
 |
19 |
 |
1.49 |
1.68 |
165.7 |
-1.67 |
-0.47 |
20.9 |
86 |
10 |
13 |
8 |
6 |
4 |
1 |
0 |
|
 |
20 |
 |
1.25 |
1.85 |
28.4 |
1.13 |
0.53 |
4.0 |
81 |
1 |
0 |
1 |
11 |
4 |
0 |
0 |
NKP 401 R
|
 |
21 |
 |
1.38 |
1.82 |
33.2 |
-1.52 |
0.11 |
18.0 |
62 |
4 |
1 |
2 |
1 |
9 |
0 |
2 |
NKP 401 R
|
 |
22 |
 |
1.96 |
2.25 |
37.9 |
0.35 |
0.67 |
4.2 |
71 |
2 |
0 |
2 |
7 |
9 |
0 |
0 |
NKP 401 R
|
 |
23 |
 |
1.14 |
1.42 |
38.4 |
0.44 |
0.54 |
2.4 |
78 |
0 |
1 |
2 |
9 |
6 |
1 |
0 |
NKP 401 R
|
 |
24 |
 |
1.11 |
1.39 |
45.8 |
0.09 |
0.64 |
3.7 |
71 |
2 |
1 |
2 |
8 |
10 |
1 |
0 |
NKP 401 R
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |