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PDBsum entry 9is4
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Top Page protein ligands metals Protein-protein interface(s) links
Photosynthesis PDB id
9is4
Contents
Protein chains
159 a.a.
315 a.a.
480 a.a.
449 a.a.
348 a.a.
75 a.a.
31 a.a.
219 a.a.
68 a.a.
35 a.a.
37 a.a.
36 a.a.
30 a.a.
219 a.a.
207 a.a.
250 a.a.
30 a.a.
32 a.a.
56 a.a.
32 a.a.
220 a.a.
61 a.a.
71 a.a.
34 a.a.
37 a.a.
30 a.a.
160 a.a.
27 a.a.
Ligands
CLA ×109
PHO ×4
BCR ×20
SQD ×3
LMG ×10
LHG ×15
DGD ×8
LMU ×4
BCT ×2
PL9 ×2
HEM
CHL ×25
LUT ×8
NEX ×5
XAT ×4
Metals
FE2
procheck   Generate full PROCHECK analyses

PROCHECK summary for 9is4

Ramachandran plot

PROCHECK statistics

1. Ramachandran Plot statistics


                                         No. of
                                        residues     %-tage
                                         ------      ------
Most favoured regions      [A,B,L]         4134       89.7%*  
Additional allowed regions [a,b,l,p]        456        9.9%          
Generously allowed regions [~a,~b,~l,~p]     12        0.3%          
Disallowed regions         [XX]               8        0.2%*  
                                           ----      ------
Non-glycine and non-proline residues       4610      100.0%

End-residues (excl. Gly and Pro)             78

Glycine residues                            588
Proline residues                            293
                                           ----
Total number of residues                   5569

Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good quality model would be expected to have over 90% in the most favoured regions [A,B,L].

2. G-Factors

                                                Average
Parameter                            Score       Score
---------                            -----       -----
Dihedral angles:-
     Phi-psi distribution             0.17      
     Chi1-chi2 distribution          -0.28      
     Chi1 only                       -0.04      
     Chi3 & chi4                      0.43      
     Omega                           -0.03      
                                                   0.02      
                                                  =====
Main-chain covalent forces:-
     Main-chain bond lengths          0.67      
     Main-chain bond angles           0.47      
                                                   0.55      
                                                  =====

     OVERALL AVERAGE                               0.24      
                                                  =====

G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is. 

Values below -0.5*  - unusual
Values below -1.0** - highly unusual
Important note: The main-chain bond-lengths and bond angles are compared with the Engh & Huber (1991) ideal values derived from small-molecule data. Therefore, structures refined using different restraints may show apparently large deviations from normality.

 

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