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PDBsum entry 9imk
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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 9imk calculated with MOLE 2.0 PDB id
9imk
Pores calculated on whole structure Pores calculated excluding ligands
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47 pores, coloured by radius 44 pores, coloured by radius 44 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.44 1.77 27.1 -1.14 -0.40 9.5 84 2 1 3 3 1 3 0  
2 1.16 2.77 39.6 1.37 0.26 4.1 72 0 2 2 9 1 1 0  
3 1.52 1.97 46.4 -1.65 -0.43 16.4 86 4 4 4 1 1 3 0  
4 1.43 1.76 47.6 0.45 -0.03 3.6 82 1 1 5 12 0 1 0  
5 1.45 1.77 61.2 -1.69 -0.42 17.2 81 6 5 5 4 2 4 0  
6 1.76 1.76 61.6 -1.62 -0.44 20.4 88 5 3 4 1 1 0 0  U 2 P U 3 P A 4 P A 6 P G 7 P A 47 R U 48 R
7 1.18 1.52 114.4 -0.40 -0.25 10.7 84 8 3 6 9 7 0 1  C 28 P A 29 P A 30 P A 31 P C 32 P C 33 P A 34 P
A 35 P C 36 P C 37 P A 38 P A 39 P C 40 P A 19 R
U 21 R U 22 R G 24 R U 25 R U 26 R G 27 R
8 1.36 1.52 141.9 -1.29 -0.44 15.2 85 10 6 10 13 3 2 0  A 35 O C 36 O C 37 O A 17 Q A 18 Q A 19 Q G 20 Q
U 21 Q
9 2.49 2.53 148.0 -1.02 -0.46 10.9 86 5 3 8 6 4 3 0  C 28 P A 29 P A 30 P A 31 P C 32 P C 33 P G 23 R
G 24 R U 25 R U 26 R G 27 R
10 1.36 1.35 153.8 -1.16 -0.38 11.0 84 9 4 11 12 3 3 0  C 15 Q A 16 Q
11 2.03 2.02 158.7 -0.91 -0.53 12.4 78 10 4 5 4 5 1 0  U 2 P U 3 P A 4 P A 5 P A 6 P G 7 P G 8 P U 9 P U
10 P U 11 P A 12 P U 13 P A 14 P C 15 P A 22 P G
23 P G 24 P U 25 P A 26 P A 27 P C 28 P U 26 R G
27 R G 28 R U 29 R U 30 R U 31 R G 40 R G 41 R A
42 R A 43 R G 44 R G 45 R U 46 R A 47 R U 48 R A
49 R A 50 R
12 1.27 1.55 163.4 -1.02 -0.40 17.5 87 10 7 7 17 1 0 0  A 35 O C 36 O C 37 O A 17 Q A 18 Q A 19 Q G 20 Q
U 21 Q
13 1.21 1.18 164.5 -0.78 -0.40 15.8 85 11 6 5 15 0 0 0  A 35 O C 36 O C 37 O A 38 O A 39 O C 40 O A 17 Q
A 18 Q A 19 Q
14 1.22 1.19 167.5 -1.19 -0.44 16.1 85 13 7 10 12 2 2 0  A 35 O C 36 O C 37 O A 38 O A 39 O C 40 O A 17 Q
A 18 Q A 19 Q
15 1.40 1.39 177.7 -1.01 -0.38 13.8 83 8 5 8 16 1 2 0  C 15 Q A 16 Q A 17 Q
16 2.40 4.26 180.5 -0.89 -0.46 12.9 80 14 5 7 5 6 1 0  A 6 P G 7 P G 8 P U 9 P U 10 P U 11 P A 12 P U 13
P A 14 P C 15 P A 22 P G 23 P G 24 P U 25 P A 26
P A 27 P C 28 P U 26 R G 27 R G 28 R U 29 R U 30
R U 31 R G 40 R G 41 R A 42 R A 43 R G 44 R G 45
R U 46 R A 47 R U 48 R A 49 R
17 1.85 1.87 180.6 -1.03 -0.58 12.1 83 8 4 4 4 1 2 0  U 2 O U 3 O A 4 O A 5 O A 6 O G 7 O G 8 O U 9 O U
10 O U 11 O A 12 O U 13 O A 14 O C 15 O G 40 Q G
41 Q A 42 Q A 43 Q G 44 Q G 45 Q U 46 Q A 47 Q U
48 Q A 49 Q A 50 Q
18 1.21 1.22 223.9 -1.28 -0.44 17.8 85 14 8 8 19 3 1 0  A 35 O C 36 O C 37 O C 15 Q A 16 Q A 17 Q A 18 Q
A 19 Q G 20 Q U 21 Q
19 1.85 1.85 241.0 -1.35 -0.51 15.6 82 15 7 12 6 5 4 0  U 2 P U 3 P A 4 P A 5 P A 6 P G 7 P G 8 P U 9 P U
10 P U 11 P A 12 P U 13 P A 14 P C 15 P A 22 P A
31 P C 32 P U 29 R U 30 R G 40 R G 41 R A 42 R A
43 R G 44 R G 45 R U 46 R A 47 R U 48 R A 49 R A
50 R
20 1.01 1.19 261.5 -1.17 -0.35 16.2 83 19 10 13 13 8 4 1  A 31 P C 32 P C 33 P A 34 P A 35 P C 36 P C 37 P
A 38 P A 39 P C 40 P A 16 R A 17 R A 18 R A 19 R
U 29 R
21 2.61 2.78 266.5 -1.33 -0.44 16.1 82 18 8 13 8 6 4 0  A 6 P G 7 P G 8 P U 9 P U 10 P U 11 P A 12 P U 13
P A 14 P C 15 P A 22 P A 31 P C 32 P U 29 R U 30
R G 40 R G 41 R A 42 R A 43 R G 44 R G 45 R U 46
R A 47 R U 48 R A 49 R
22 1.20 2.68 328.7 -1.28 -0.40 18.4 86 20 12 15 14 5 3 0  A 6 O G 7 O G 8 O U 9 O U 10 O U 11 O A 12 O U 13
O A 14 O C 15 O G 40 Q G 41 Q A 42 Q A 43 Q G 44
Q G 45 Q U 46 Q A 47 Q U 48 Q A 49 Q
23 1.29 2.54 327.6 -1.14 -0.44 14.9 86 17 10 17 14 7 1 0  A 5 O A 6 O G 7 O G 8 O U 9 O U 10 O U 11 O A 12
O U 13 O A 14 O C 15 O C 28 P A 29 P A 30 P A 31
P C 32 P C 33 P G 40 Q G 41 Q A 42 Q A 43 Q G 44
Q G 45 Q U 46 Q A 47 Q U 48 Q A 49 Q G 23 R G 24
R U 25 R U 26 R G 27 R
24 1.20 3.18 371.0 -1.11 -0.39 14.6 81 24 12 16 15 11 5 1  A 5 O A 6 O G 7 O G 8 O U 9 O U 10 O U 11 O A 12
O U 13 O A 14 O C 15 O C 16 O U 17 O A 22 O G 23
O G 24 O C 32 O C 33 O A 34 O A 35 O A 16 Q A 17
Q A 18 Q U 29 Q U 30 Q C 37 Q U 38 Q G 39 Q G 40
Q G 41 Q A 42 Q A 43 Q G 44 Q G 45 Q U 46 Q A 47
Q U 48 Q A 49 Q
25 1.29 2.00 376.2 -1.08 -0.33 17.5 83 31 16 15 23 7 4 0  C 40 O A 6 P G 7 P G 8 P U 9 P U 10 P U 11 P A 12
P U 13 P A 14 P C 15 P A 22 P C 32 P C 33 P A 34
P A 35 P A 16 R A 17 R U 29 R U 30 R G 40 R G 41
R A 42 R A 43 R G 44 R G 45 R U 46 R A 47 R U 48
R A 49 R
26 1.29 2.25 391.6 -0.97 -0.43 14.7 83 26 11 13 19 8 1 1  A 6 O G 7 O G 8 O U 9 O U 10 O U 11 O A 12 O U 13
O A 14 O C 15 O C 16 O U 17 O A 22 O G 23 O G 24
O U 25 O A 26 O A 27 O C 28 O A 29 O A 30 O A 31
O C 32 O C 33 O C 37 O A 38 O A 39 O C 40 O A 19
Q G 20 Q U 21 Q U 22 Q G 23 Q G 24 Q U 25 Q U 26
Q G 27 Q G 28 Q U 29 Q U 30 Q U 31 Q C 37 Q U 38
Q G 39 Q G 40 Q G 41 Q A 42 Q A 43 Q G 44 Q G 45
Q U 46 Q A 47 Q U 48 Q A 49 Q
27 1.19 2.45 499.2 -1.36 -0.43 17.5 84 28 19 24 17 9 4 0  U 2 O U 3 O A 4 O A 6 O G 7 O U 2 P U 3 P A 4 P A
5 P A 6 P G 7 P G 8 P U 9 P U 10 P U 11 P A 12 P
U 13 P A 14 P C 15 P A 22 P A 31 P C 32 P A 47 Q
U 48 Q A 49 Q U 29 R U 30 R G 40 R G 41 R A 42 R
A 43 R G 44 R G 45 R U 46 R A 47 R U 48 R A 49 R
A 50 R
28 1.27 3.93 39.1 1.09 0.20 7.4 71 1 2 1 13 1 0 0  
29 1.32 1.31 40.0 -1.19 -0.51 11.8 88 2 3 5 7 0 2 0  
30 1.28 2.00 43.3 0.65 0.12 7.8 74 1 2 2 8 1 1 0  
31 1.29 1.29 48.6 -0.99 -0.37 10.9 84 4 1 2 5 2 2 0  
32 2.87 5.38 52.2 -1.05 -0.24 16.8 87 3 2 5 4 1 1 0  A 13 R
33 1.26 1.32 54.2 1.86 0.61 5.9 75 2 2 2 17 3 1 0  
34 1.80 2.05 57.3 -1.52 -0.43 11.9 88 4 2 5 4 2 2 0  
35 2.88 5.38 60.8 -0.83 -0.25 14.6 92 4 2 6 6 0 2 0  
36 1.26 2.03 60.9 1.08 0.29 7.7 75 1 3 2 14 3 2 0  
37 1.36 1.35 73.6 -1.44 -0.40 13.6 81 3 3 5 7 1 3 0  A 13 R
38 1.34 2.08 76.9 0.31 0.20 7.7 82 4 1 7 12 1 1 0  
39 1.28 3.07 79.3 0.68 0.21 6.8 78 4 1 5 17 1 1 0  
40 1.52 1.51 85.1 -1.20 -0.37 12.4 87 4 3 6 9 0 4 0  
41 1.56 1.95 87.2 -1.35 -0.30 13.6 77 5 3 3 4 3 4 1  A 13 R
42 1.56 1.95 96.0 -1.12 -0.31 12.1 84 6 3 5 6 2 5 1  
43 1.27 2.01 97.5 -0.12 0.01 9.5 77 3 3 5 10 2 2 0  A 13 R
44 1.81 2.01 121.4 -0.56 -0.20 7.8 84 2 2 7 12 1 3 0  A 13 R

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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