PDBsum entry 9ijd Go to PDB code:  Tunnel analysis for: 9ijd calculated with MOLE 2.0 PDB id 9ijd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.39 2.78 28.9 -0.59 -0.50 10.0 86 2 1 4 2 1 1 2   2 1.53 1.64 31.7 -2.03 -0.46 18.7 84 5 2 3 3 2 0 0   3 1.54 1.85 32.2 -2.44 -0.49 22.7 84 5 2 4 1 2 0 0   4 2.20 2.40 32.8 -0.79 -0.50 9.9 85 3 1 6 1 2 1 2   5 1.46 1.53 17.6 1.49 0.50 1.7 87 1 0 3 4 4 0 0  CAU 401 R 6 1.46 1.51 31.0 1.33 0.57 2.8 78 0 1 2 7 5 0 0  CAU 401 R 7 1.17 1.41 16.8 -0.35 -0.47 2.9 97 0 0 2 2 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.