PDBsum entry 9ii3

Pore analysis for: 9ii3 calculated with

MOLE 2.0

PDB id

9ii3

Pores calculated on whole structure

Pores calculated excluding ligands

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14 pores, coloured by radius

13 pores, coloured by radius

13 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.24

1.34

28.8

-0.42

-0.17

13.3

75

2

1

2

2

5

0

0

2

1.22

1.39

32.9

-0.11

-0.15

15.4

80

1

3

3

5

3

0

0

3

1.64

3.61

58.2

-1.86

-0.37

24.1

76

6

3

2

2

6

2

0

4

1.21

1.25

85.4

-0.84

-0.19

18.2

81

6

4

4

7

5

0

0

5

1.27

1.35

93.4

-1.43

-0.20

24.1

76

13

7

1

7

6

1

0

SEP 856 R SEP 857 R

6

1.27

1.28

93.5

-1.52

-0.31

20.9

77

15

5

5

5

7

2

0

SEP 856 R SEP 857 R SEP 859 R

7

1.25

1.40

117.7

-1.42

-0.22

24.1

76

16

7

1

8

5

2

0

SEP 856 R SEP 857 R

8

1.28

1.30

120.7

-1.53

-0.29

26.7

82

15

9

3

8

3

1

0

SEP 856 R SEP 857 R

9

1.35

1.37

129.3

-1.65

-0.35

24.1

83

16

8

7

7

6

2

0

SEP 856 R SEP 857 R SEP 859 R

10

1.30

2.88

38.9

-2.06

-0.42

18.8

87

6

3

6

2

2

0

0

GLU 901 B

11

1.44

2.10

152.8

-2.29

-0.53

23.8

85

14

6

11

3

4

1

0

12

1.20

1.09

227.9

-1.66

-0.49

16.6

85

10

4

10

5

2

5

0

NAG 1 C NAG 2 C

13

1.29

1.30

357.3

-1.37

-0.35

14.0

83

15

8

19

14

6

6

0

NAG 1 C NAG 2 C

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.