spacer
spacer

PDBsum entry 9i6f

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 9i6f calculated with MOLE 2.0 PDB id
9i6f
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.22 1.34 60.9 0.64 0.26 6.3 87 4 0 7 15 6 1 0  HEA 604 A
2 1.21 1.32 62.8 0.50 0.53 11.7 83 7 0 4 14 6 1 0  HEA 604 A HEA 605 A
3 1.25 1.37 75.1 1.21 0.61 5.9 77 5 0 3 17 8 2 0  HEA 604 A HEA 605 A
4 1.25 1.30 75.6 1.31 0.52 4.2 78 3 1 3 19 8 1 0  HEA 604 A HEA 605 A
5 1.28 1.41 79.0 0.69 0.41 6.8 79 5 1 4 14 8 2 0  HEA 604 A HEA 605 A
6 1.29 1.42 80.2 0.10 0.02 9.3 82 5 3 8 16 9 1 0  HEA 604 A
7 1.20 2.26 93.0 -1.28 -0.03 21.1 80 10 7 7 11 8 2 0  MG 602 A HEA 604 A HEA 605 A CDL 607 A
8 1.24 1.35 96.4 0.83 0.38 6.6 76 8 0 3 19 9 1 0  HEA 604 A HEA 605 A
9 1.31 1.94 17.6 0.61 0.20 17.1 63 2 2 0 4 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer