PDBsum entry 9gyo Go to PDB code:  Tunnel analysis for: 9gyo calculated with MOLE 2.0 PDB id 9gyo Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.37 3.93 28.6 -1.93 -0.30 18.2 83 4 2 2 4 2 0 0   2 2.40 2.48 33.6 -0.98 -0.51 12.7 81 3 1 4 1 1 2 2   3 2.41 2.53 33.7 -0.87 -0.48 12.9 85 2 1 4 2 1 1 2   4 1.28 1.28 24.4 0.09 0.19 3.8 70 0 1 7 6 5 0 0  FWX 401 R 5 1.34 1.52 24.5 0.90 0.24 3.6 73 0 1 6 7 3 1 0  FWX 401 R 6 1.27 1.27 29.6 0.17 0.41 4.1 67 0 1 6 7 5 1 0  FWX 401 R 7 1.32 1.69 30.0 1.33 0.34 3.8 70 0 1 5 9 3 0 0  FWX 401 R Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.