spacer
spacer

PDBsum entry 9gwt

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 9gwt calculated with MOLE 2.0 PDB id
9gwt
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
5 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.12 1.12 20.5 -0.12 -0.39 5.9 73 1 0 3 3 1 2 1  
2 1.13 1.13 23.6 -0.10 -0.36 5.0 72 1 0 3 3 2 1 1  
3 1.62 3.28 16.4 -0.54 -0.64 2.2 100 0 0 7 1 1 0 0  
4 1.61 3.00 16.6 -0.62 -0.66 2.1 101 0 0 7 1 1 0 0  
5 1.90 1.97 15.8 0.59 0.10 9.3 86 0 1 1 3 0 0 1  
6 1.29 1.63 15.3 0.21 -0.06 13.1 85 1 0 0 3 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer