 |
PDBsum entry 9gg5
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 9gg5 calculated with MOLE 2.0
|
PDB id
|
|
|
|
9gg5
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
7 pores,
coloured by radius |
 |
7 pores,
coloured by radius
|
7 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.70 |
2.27 |
54.5 |
-1.11 |
-0.38 |
17.5 |
84 |
 |
5 |
2 |
3 |
3 |
2 |
0 |
0 |
 |
|
 |
 |
2 |
 |
1.70 |
2.27 |
60.8 |
-1.44 |
-0.41 |
19.8 |
86 |
9 |
1 |
3 |
4 |
1 |
0 |
0 |
|
 |
3 |
 |
1.84 |
3.93 |
82.1 |
-1.20 |
-0.39 |
15.0 |
81 |
8 |
5 |
7 |
3 |
3 |
2 |
4 |
|
 |
4 |
 |
1.59 |
2.58 |
85.8 |
-1.52 |
-0.49 |
21.0 |
86 |
10 |
9 |
5 |
5 |
2 |
2 |
0 |
|
 |
5 |
 |
1.59 |
2.56 |
86.4 |
-1.34 |
-0.39 |
22.5 |
85 |
9 |
7 |
4 |
8 |
0 |
2 |
0 |
|
 |
6 |
 |
1.79 |
2.27 |
93.4 |
-1.10 |
-0.27 |
15.9 |
79 |
9 |
3 |
7 |
5 |
2 |
2 |
4 |
|
 |
7 |
 |
1.61 |
2.57 |
121.8 |
-1.29 |
-0.36 |
18.5 |
82 |
14 |
10 |
9 |
8 |
3 |
4 |
4 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |