 |
PDBsum entry 9fmt
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 9fmt calculated with MOLE 2.0
|
PDB id
|
|
|
|
9fmt
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
29 pores,
coloured by radius |
 |
29 pores,
coloured by radius
|
29 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.28 |
1.63 |
32.9 |
-1.21 |
-0.23 |
21.6 |
86 |
 |
5 |
3 |
1 |
3 |
0 |
1 |
0 |
 |
|
 |
 |
2 |
 |
1.64 |
1.87 |
41.8 |
-1.34 |
-0.21 |
16.7 |
77 |
2 |
3 |
2 |
3 |
4 |
3 |
0 |
|
 |
3 |
 |
1.50 |
1.51 |
63.8 |
-1.36 |
-0.15 |
12.5 |
79 |
3 |
5 |
7 |
3 |
7 |
1 |
0 |
|
 |
4 |
 |
1.58 |
2.47 |
66.5 |
-1.70 |
0.00 |
20.8 |
78 |
5 |
4 |
3 |
1 |
4 |
2 |
0 |
|
 |
5 |
 |
1.41 |
1.57 |
85.4 |
-1.27 |
-0.42 |
17.4 |
78 |
4 |
11 |
6 |
7 |
2 |
6 |
1 |
|
 |
6 |
 |
1.77 |
1.96 |
93.0 |
-1.33 |
-0.16 |
13.9 |
77 |
8 |
5 |
6 |
3 |
5 |
7 |
0 |
|
 |
7 |
 |
1.21 |
1.20 |
95.3 |
-1.93 |
-0.47 |
23.5 |
82 |
7 |
7 |
4 |
2 |
2 |
3 |
0 |
|
 |
8 |
 |
2.14 |
2.15 |
105.9 |
-1.14 |
-0.13 |
15.8 |
77 |
6 |
7 |
4 |
4 |
8 |
2 |
0 |
|
 |
9 |
 |
1.09 |
1.45 |
106.2 |
-0.76 |
-0.17 |
13.9 |
80 |
6 |
4 |
6 |
6 |
2 |
3 |
0 |
|
 |
10 |
 |
1.76 |
1.94 |
106.5 |
-1.53 |
-0.26 |
15.0 |
77 |
9 |
5 |
8 |
4 |
5 |
8 |
0 |
|
 |
11 |
 |
1.87 |
2.83 |
108.5 |
-1.33 |
-0.37 |
20.9 |
82 |
8 |
8 |
3 |
5 |
4 |
1 |
0 |
|
 |
12 |
 |
1.79 |
3.96 |
129.3 |
-1.60 |
-0.10 |
18.2 |
78 |
6 |
8 |
6 |
2 |
8 |
4 |
0 |
|
 |
13 |
 |
1.82 |
3.16 |
130.6 |
-1.93 |
-0.37 |
24.7 |
83 |
8 |
8 |
5 |
3 |
4 |
2 |
0 |
|
 |
14 |
 |
1.78 |
2.00 |
133.8 |
-1.65 |
-0.20 |
18.8 |
77 |
10 |
7 |
7 |
4 |
8 |
5 |
0 |
|
 |
15 |
 |
1.78 |
2.00 |
137.5 |
-1.63 |
-0.41 |
21.2 |
81 |
12 |
8 |
7 |
6 |
5 |
4 |
0 |
|
 |
16 |
 |
3.59 |
4.01 |
144.5 |
-1.75 |
-0.27 |
14.0 |
81 |
6 |
13 |
16 |
5 |
10 |
7 |
0 |
|
 |
17 |
 |
1.39 |
1.35 |
152.2 |
-1.43 |
-0.21 |
15.0 |
80 |
9 |
10 |
10 |
4 |
6 |
8 |
0 |
|
 |
18 |
 |
1.81 |
3.67 |
155.9 |
-1.60 |
-0.14 |
18.4 |
79 |
8 |
10 |
8 |
2 |
9 |
5 |
0 |
|
 |
19 |
 |
2.45 |
3.85 |
166.2 |
-1.50 |
-0.31 |
18.1 |
81 |
12 |
10 |
8 |
5 |
7 |
5 |
0 |
|
 |
20 |
 |
1.50 |
2.59 |
165.6 |
-1.79 |
-0.35 |
16.1 |
85 |
9 |
14 |
17 |
6 |
6 |
7 |
0 |
|
 |
21 |
 |
1.19 |
1.75 |
167.6 |
-0.75 |
-0.06 |
13.1 |
79 |
11 |
6 |
8 |
8 |
5 |
6 |
0 |
|
 |
22 |
 |
1.82 |
1.98 |
164.7 |
-1.65 |
-0.18 |
17.5 |
78 |
12 |
10 |
10 |
5 |
8 |
7 |
0 |
|
 |
23 |
 |
1.21 |
1.21 |
179.1 |
-0.64 |
-0.32 |
12.2 |
83 |
5 |
8 |
9 |
11 |
4 |
6 |
0 |
|
 |
24 |
 |
1.35 |
1.52 |
205.9 |
-1.13 |
-0.24 |
18.5 |
81 |
15 |
8 |
9 |
10 |
5 |
3 |
0 |
|
 |
25 |
 |
1.67 |
3.22 |
231.1 |
-1.57 |
-0.35 |
20.2 |
81 |
16 |
14 |
10 |
6 |
10 |
4 |
0 |
|
 |
26 |
 |
1.24 |
1.75 |
238.1 |
-1.06 |
0.01 |
13.7 |
77 |
14 |
11 |
13 |
9 |
12 |
8 |
0 |
|
 |
27 |
 |
1.30 |
1.30 |
246.2 |
-0.91 |
-0.35 |
11.3 |
83 |
8 |
9 |
13 |
10 |
8 |
5 |
0 |
|
 |
28 |
 |
1.62 |
2.63 |
248.3 |
-1.56 |
-0.29 |
18.8 |
81 |
18 |
17 |
13 |
7 |
10 |
6 |
0 |
|
 |
29 |
 |
1.36 |
1.36 |
270.4 |
-0.69 |
-0.30 |
13.7 |
86 |
10 |
10 |
15 |
15 |
3 |
8 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |