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PDBsum entry 9fmt

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Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 9fmt calculated with MOLE 2.0 PDB id
9fmt
Pores calculated on whole structure Pores calculated excluding ligands

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29 pores, coloured by radius 29 pores, coloured by radius 29 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.28 1.63 32.9 -1.21 -0.23 21.6 86 5 3 1 3 0 1 0  
2 1.64 1.87 41.8 -1.34 -0.21 16.7 77 2 3 2 3 4 3 0  
3 1.50 1.51 63.8 -1.36 -0.15 12.5 79 3 5 7 3 7 1 0  
4 1.58 2.47 66.5 -1.70 0.00 20.8 78 5 4 3 1 4 2 0  
5 1.41 1.57 85.4 -1.27 -0.42 17.4 78 4 11 6 7 2 6 1  
6 1.77 1.96 93.0 -1.33 -0.16 13.9 77 8 5 6 3 5 7 0  
7 1.21 1.20 95.3 -1.93 -0.47 23.5 82 7 7 4 2 2 3 0  
8 2.14 2.15 105.9 -1.14 -0.13 15.8 77 6 7 4 4 8 2 0  
9 1.09 1.45 106.2 -0.76 -0.17 13.9 80 6 4 6 6 2 3 0  
10 1.76 1.94 106.5 -1.53 -0.26 15.0 77 9 5 8 4 5 8 0  
11 1.87 2.83 108.5 -1.33 -0.37 20.9 82 8 8 3 5 4 1 0  
12 1.79 3.96 129.3 -1.60 -0.10 18.2 78 6 8 6 2 8 4 0  
13 1.82 3.16 130.6 -1.93 -0.37 24.7 83 8 8 5 3 4 2 0  
14 1.78 2.00 133.8 -1.65 -0.20 18.8 77 10 7 7 4 8 5 0  
15 1.78 2.00 137.5 -1.63 -0.41 21.2 81 12 8 7 6 5 4 0  
16 3.59 4.01 144.5 -1.75 -0.27 14.0 81 6 13 16 5 10 7 0  
17 1.39 1.35 152.2 -1.43 -0.21 15.0 80 9 10 10 4 6 8 0  
18 1.81 3.67 155.9 -1.60 -0.14 18.4 79 8 10 8 2 9 5 0  
19 2.45 3.85 166.2 -1.50 -0.31 18.1 81 12 10 8 5 7 5 0  
20 1.50 2.59 165.6 -1.79 -0.35 16.1 85 9 14 17 6 6 7 0  
21 1.19 1.75 167.6 -0.75 -0.06 13.1 79 11 6 8 8 5 6 0  
22 1.82 1.98 164.7 -1.65 -0.18 17.5 78 12 10 10 5 8 7 0  
23 1.21 1.21 179.1 -0.64 -0.32 12.2 83 5 8 9 11 4 6 0  
24 1.35 1.52 205.9 -1.13 -0.24 18.5 81 15 8 9 10 5 3 0  
25 1.67 3.22 231.1 -1.57 -0.35 20.2 81 16 14 10 6 10 4 0  
26 1.24 1.75 238.1 -1.06 0.01 13.7 77 14 11 13 9 12 8 0  
27 1.30 1.30 246.2 -0.91 -0.35 11.3 83 8 9 13 10 8 5 0  
28 1.62 2.63 248.3 -1.56 -0.29 18.8 81 18 17 13 7 10 6 0  
29 1.36 1.36 270.4 -0.69 -0.30 13.7 86 10 10 15 15 3 8 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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