PDBsum entry 9fjh

Tunnel analysis for: 9fjh calculated with

MOLE 2.0

PDB id

9fjh

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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without HETATM:

6 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.38

2.29

19.7

0.13

0.24

10.1

84

1

3

1

5

2

1

0

2

1.53

2.71

32.9

0.55

0.45

11.5

78

3

0

2

8

4

1

0

TPO 78 C

3

1.51

2.66

34.9

-0.44

0.13

20.1

82

4

3

1

5

2

1

0

4

1.18

1.92

18.6

0.21

0.20

12.1

86

2

0

1

4

1

0

0

5

1.22

1.33

21.5

-0.63

-0.04

12.1

81

2

0

3

3

3

0

0

TPO 98 C

6

1.19

1.93

25.7

-0.24

0.21

18.3

82

3

0

1

4

1

0

0

TPO 98 C

7

1.16

1.94

33.1

0.81

0.36

6.5

83

2

1

2

5

2

2

0

8

1.19

1.55

21.4

0.11

-0.08

5.5

77

1

1

3

7

0

1

1

9

1.22

1.40

25.1

-0.08

-0.08

7.5

77

2

1

3

6

1

1

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.