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PDBsum entry 9fb0

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Top Page protein dna_rna ligands Protein-protein interface(s) pores links
Pore analysis for: 9fb0 calculated with MOLE 2.0 PDB id
9fb0
Pores calculated on whole structure Pores calculated excluding ligands

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30 pores, coloured by radius 24 pores, coloured by radius 24 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.27 3.02 34.6 -0.87 0.00 27.8 79 5 3 0 5 0 0 0  ATP 800 E DT 8 S
2 1.98 4.18 37.8 -1.67 -0.49 17.9 81 2 3 3 3 1 0 0  
3 1.93 2.21 39.5 -2.07 -0.56 25.1 85 7 3 3 2 1 0 0  
4 1.63 1.63 39.7 -1.70 -0.52 18.9 80 4 3 3 3 2 1 0  
5 1.74 2.49 42.3 -1.84 -0.46 21.5 77 4 3 3 3 3 1 0  
6 2.67 3.41 44.2 -2.30 -0.44 21.9 79 4 2 3 2 0 3 0  DT 8 S
7 2.42 2.68 49.6 -2.56 -0.46 29.8 82 9 5 4 2 0 0 0  DT 7 S DT 8 S
8 1.24 1.67 52.0 -2.09 -0.35 27.1 79 7 4 2 5 2 1 0  ATP 800 E
9 1.43 2.55 51.9 -1.94 -0.38 24.7 78 7 4 5 4 1 2 0  ATP 800 E
10 1.82 2.00 54.3 -0.24 0.07 14.6 78 5 4 3 10 2 0 0  ATP 800 F
11 1.15 2.68 57.3 -2.09 -0.34 28.5 84 6 3 4 1 1 1 0  
12 1.31 1.67 74.4 -2.13 -0.39 27.7 80 12 5 3 6 2 0 0  DT 7 S DT 8 S
13 2.76 3.77 83.0 -1.95 -0.37 28.4 81 12 4 4 8 1 0 0  
14 2.57 4.45 91.6 -1.51 -0.20 26.1 81 16 5 7 8 0 0 0  DT 1 S DT 2 S
15 1.43 2.68 92.9 -1.86 -0.35 28.5 80 11 8 7 6 1 1 0  
16 2.03 2.33 95.1 -1.78 -0.29 27.2 78 16 6 4 10 3 1 0  
17 2.31 2.32 98.2 -1.24 -0.32 20.7 81 11 6 5 10 0 1 0  DT 1 S DT 2 S DT 3 S DT 4 S DT 5 S DT 6 S DT 7 S
DT 8 S
18 2.02 2.30 100.0 -1.88 -0.31 27.9 81 16 5 3 11 2 0 0  
19 2.17 2.17 116.4 -1.28 -0.30 20.6 79 15 6 7 11 1 1 0  DT 1 S DT 2 S DT 3 S DT 4 S DT 5 S DT 6 S DT 7 S
DT 8 S
20 1.96 2.72 120.2 -1.04 -0.24 19.5 78 14 9 8 16 4 1 0  ATP 800 F
21 2.07 2.26 124.0 -1.51 -0.23 25.0 80 20 4 6 12 3 0 0  DT 1 S DT 2 S
22 1.90 2.21 140.9 -0.57 -0.13 16.0 80 14 8 7 23 2 0 0  ATP 800 F DT 1 S
23 1.87 2.24 159.1 -0.67 -0.14 16.2 78 17 8 10 25 3 0 0  ATP 800 F DT 1 S DT 2 S
24 1.28 1.22 189.0 -0.97 -0.01 22.0 77 23 9 8 21 6 1 0  ATP 800 E

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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