 |
PDBsum entry 9emh
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 9emh calculated with MOLE 2.0
|
PDB id
|
|
|
|
9emh
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
5 pores,
coloured by radius |
 |
3 pores,
coloured by radius
|
3 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.21 |
1.72 |
38.2 |
-1.97 |
-0.31 |
18.7 |
74 |
 |
4 |
3 |
3 |
1 |
2 |
2 |
0 |
 |
|
 |
 |
2 |
 |
1.60 |
3.12 |
88.5 |
-2.36 |
-0.49 |
22.1 |
80 |
9 |
4 |
7 |
3 |
2 |
2 |
0 |
DC 10 P DA 11 P DA 13 P DA 1 T DA 2 T DC 3 T
|
 |
3 |
 |
1.53 |
1.62 |
28.9 |
-0.95 |
-0.54 |
7.3 |
70 |
1 |
0 |
1 |
1 |
2 |
1 |
0 |
DC 3 P DC 4 P DG 7 P DC 10 T DG 11 T DT 12 T DG 13 T DG 14 T
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |