PDBsum entry 9ebq

Pore analysis for: 9ebq calculated with

MOLE 2.0

PDB id

9ebq

Pores calculated on whole structure

Pores calculated excluding ligands

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17 pores, coloured by radius

17 pores, coloured by radius

17 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.49

2.49

26.2

-1.43

-0.61

8.1

79

3

0

4

3

1

0

0

2

1.92

2.19

26.7

-0.68

0.11

10.1

62

2

1

1

2

5

0

0

3

1.48

2.04

26.7

0.22

0.46

11.4

72

1

1

1

5

3

0

0

4

3.29

3.49

27.4

-2.06

-0.42

24.2

82

5

2

4

2

2

0

0

5

1.30

1.73

31.0

-0.62

0.17

18.7

69

4

2

1

5

4

0

0

6

1.47

2.04

32.2

0.84

0.45

9.9

81

1

1

2

7

3

0

0

7

1.37

2.06

32.9

-1.47

-0.41

24.7

85

5

3

1

4

0

0

0

8

1.48

1.66

38.5

-0.24

0.23

9.8

74

2

1

3

4

4

0

0

9

1.47

2.04

41.1

-0.45

0.22

9.4

69

2

2

2

3

6

0

0

10

1.29

1.72

42.3

-0.43

0.21

19.3

74

5

3

1

4

5

0

0

11

1.30

1.72

43.7

-0.11

0.25

18.2

77

5

2

2

8

4

0

0

12

1.61

1.63

84.1

-1.04

-0.38

15.3

85

7

3

8

6

2

0

1

13

1.57

1.70

86.8

-1.26

-0.39

14.7

85

7

2

9

7

2

0

1

14

1.85

1.88

90.7

-1.67

-0.33

22.5

86

10

5

9

6

3

0

0

15

1.29

1.35

106.3

-1.51

-0.50

16.8

88

9

5

11

8

3

1

1

16

1.31

1.37

107.9

-1.30

-0.36

17.8

83

11

6

9

8

6

1

1

17

1.75

1.81

139.4

-1.38

-0.32

18.6

83

13

5

13

10

5

0

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.