 |
PDBsum entry 9ebo
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 9ebo calculated with MOLE 2.0
|
PDB id
|
|
|
|
9ebo
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
8 pores,
coloured by radius |
 |
7 pores,
coloured by radius
|
7 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.73 |
2.78 |
25.7 |
-1.87 |
-0.69 |
9.4 |
81 |
 |
2 |
1 |
6 |
2 |
1 |
0 |
0 |
 |
|
 |
 |
2 |
 |
2.03 |
3.30 |
27.4 |
-0.86 |
-0.29 |
11.8 |
83 |
4 |
1 |
5 |
4 |
0 |
0 |
0 |
|
 |
3 |
 |
2.03 |
3.31 |
28.8 |
-0.83 |
-0.40 |
8.0 |
85 |
3 |
1 |
4 |
3 |
1 |
0 |
0 |
|
 |
4 |
 |
3.83 |
4.10 |
36.1 |
-1.73 |
-0.23 |
21.8 |
79 |
6 |
1 |
4 |
2 |
3 |
0 |
0 |
|
 |
5 |
 |
2.79 |
3.04 |
38.5 |
-1.33 |
-0.11 |
18.5 |
77 |
5 |
2 |
2 |
4 |
3 |
0 |
1 |
|
 |
6 |
 |
3.03 |
3.12 |
79.5 |
-1.96 |
-0.39 |
21.5 |
81 |
8 |
5 |
6 |
3 |
3 |
1 |
0 |
|
 |
7 |
 |
2.79 |
3.04 |
84.0 |
-1.73 |
-0.30 |
19.5 |
79 |
7 |
6 |
4 |
5 |
3 |
1 |
1 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |