PDBsum entry 9dye Go to PDB code:  Pore analysis for: 9dye calculated with MOLE 2.0 PDB id 9dye Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.77 2.21 48.2 -1.58 -0.54 17.8 85 4 4 3 4 2 1 0   2 2.28 2.31 49.4 -1.63 -0.49 17.2 85 4 3 5 2 2 1 0  J40 504 R 3 1.78 2.23 57.0 -2.01 -0.59 24.0 85 7 5 4 2 2 0 0  J40 504 R 4 2.29 3.38 194.8 -1.38 -0.43 18.8 83 13 6 10 5 4 1 3  J40 504 R 5 2.34 3.49 198.9 -1.18 -0.39 17.7 85 10 10 13 8 5 2 3   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.