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PDBsum entry 9dpb
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Pore analysis for: 9dpb calculated with  MOLE 2.0
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PDB id
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9dpb
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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14 pores,
coloured by radius |
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20 pores,
coloured by radius
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20 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.83 |
2.83 |
26.0 |
-0.64 |
-0.66 |
9.1 |
85 |
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2 |
0 |
0 |
1 |
0 |
0 |
0 |
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A 23 C G 24 C C 25 C A 26 C U 27 C C 28 C A 29 C
G 30 C U 39 C C 40 C U 41 C G 42 C A 43 C NA 101 C
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2 |
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1.19 |
1.32 |
28.2 |
0.29 |
0.29 |
22.0 |
81 |
5 |
5 |
0 |
4 |
1 |
0 |
1 |
APC 602 B MG 604 B
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3 |
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3.15 |
4.26 |
28.5 |
-1.24 |
-0.46 |
22.4 |
87 |
3 |
7 |
1 |
5 |
0 |
0 |
0 |
APC 602 B
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4 |
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2.60 |
2.60 |
52.1 |
0.11 |
-0.45 |
3.7 |
71 |
0 |
1 |
0 |
1 |
1 |
1 |
0 |
G 5 C G 6 C U 8 C C 11 C U 12 C C 13 C A 14 C C
17 C A 23 C G 24 C C 25 C A 26 C A 37 C C 40 C U
41 C G 42 C A 43 C C 62 C NA 101 C
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5 |
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1.73 |
1.91 |
53.0 |
-1.18 |
-0.33 |
19.3 |
78 |
8 |
2 |
0 |
2 |
2 |
1 |
0 |
A 26 C U 27 C C 28 C A 29 C G 30 C A 37 C A 38 C
U 39 C
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6 |
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1.56 |
1.56 |
58.7 |
-1.20 |
-0.20 |
20.4 |
76 |
6 |
3 |
0 |
2 |
2 |
2 |
0 |
G 5 C G 6 C U 8 C C 11 C U 12 C C 13 C A 14 C C
17 C A 26 C U 27 C A 37 C A 38 C C 62 C
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7 |
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1.37 |
1.59 |
60.0 |
-1.60 |
-0.34 |
24.0 |
78 |
7 |
4 |
1 |
1 |
3 |
1 |
0 |
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8 |
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2.26 |
2.66 |
61.0 |
-0.57 |
-0.49 |
9.5 |
80 |
3 |
1 |
1 |
2 |
1 |
1 |
0 |
G 5 C G 6 C U 8 C C 11 C U 12 C C 13 C A 14 C C
17 C G 24 C C 25 C A 26 C U 27 C C 28 C A 29 C G
30 C A 37 C A 38 C U 39 C C 62 C
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9 |
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1.28 |
1.28 |
61.4 |
-1.47 |
-0.54 |
19.5 |
90 |
7 |
2 |
1 |
4 |
0 |
0 |
0 |
A 26 C U 27 C C 28 C A 29 C G 30 C A 38 C U 39 C
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10 |
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1.39 |
1.55 |
65.7 |
-1.51 |
-0.46 |
21.0 |
86 |
8 |
4 |
1 |
3 |
1 |
0 |
0 |
A 26 C U 27 C C 28 C A 29 C G 30 C A 38 C U 39 C
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11 |
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1.25 |
1.72 |
68.7 |
-1.20 |
-0.23 |
24.6 |
82 |
9 |
7 |
2 |
5 |
1 |
2 |
0 |
APC 602 A MG 604 A
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12 |
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1.41 |
1.75 |
76.8 |
-1.52 |
-0.38 |
21.8 |
81 |
9 |
5 |
2 |
2 |
2 |
1 |
0 |
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13 |
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1.85 |
1.85 |
80.5 |
-0.22 |
-0.55 |
6.7 |
72 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 6 C U 8 C C 11 C U 12 C C 13 C A 23 C G 24 C C
25 C A 26 C A 37 C C 40 C U 41 C G 42 C A 43 C C
68 C G 69 C NA 101 C
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14 |
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1.53 |
1.65 |
82.7 |
-0.64 |
-0.31 |
13.8 |
86 |
4 |
8 |
5 |
12 |
1 |
1 |
0 |
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15 |
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1.21 |
1.82 |
82.5 |
-0.33 |
0.06 |
20.1 |
83 |
9 |
7 |
3 |
8 |
2 |
2 |
0 |
APC 602 A MG 604 A
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16 |
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1.21 |
1.28 |
86.8 |
-0.20 |
-0.05 |
11.3 |
83 |
6 |
5 |
5 |
12 |
2 |
3 |
0 |
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17 |
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1.35 |
1.73 |
84.5 |
-1.22 |
-0.31 |
18.8 |
84 |
10 |
4 |
3 |
2 |
2 |
1 |
0 |
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18 |
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1.86 |
1.86 |
86.1 |
-0.39 |
-0.53 |
8.6 |
77 |
3 |
2 |
0 |
2 |
1 |
1 |
0 |
G 6 C U 8 C C 11 C U 12 C C 13 C G 24 C C 25 C A
26 C U 27 C C 28 C A 29 C G 30 C A 37 C A 38 C U
39 C C 68 C G 69 C
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19 |
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1.58 |
1.57 |
87.1 |
-1.19 |
-0.34 |
18.9 |
76 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 6 C U 8 C C 11 C U 12 C C 13 C A 26 C U 27 C A
37 C A 38 C C 68 C G 69 C
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20 |
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1.39 |
1.56 |
95.5 |
-1.44 |
-0.51 |
19.2 |
86 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 6 C U 8 C C 11 C U 12 C C 13 C A 26 C U 27 C A
38 C C 68 C G 69 C
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program