PDBsum entry 9dgi

Tunnel analysis for: 9dgi calculated with

MOLE 2.0

PDB id

9dgi

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

0 tunnels, coloured by tunnel radius

5 tunnels, coloured by tunnel radius

5 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.36

1.62

37.6

0.29

-0.08

6.1

87

1

1

5

8

2

1

0

2

1.15

2.34

38.9

0.76

0.04

4.4

83

0

2

5

10

2

1

0

3

1.25

2.33

39.4

0.89

0.25

2.5

82

0

1

5

9

4

0

0

4

1.12

2.59

44.9

0.07

-0.08

7.6

88

2

2

5

9

2

1

0

5

1.15

1.15

51.2

-0.10

-0.11

8.5

88

2

1

7

8

2

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.