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PDBsum entry 9dch

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 9dch calculated with MOLE 2.0 PDB id
9dch
Pores calculated on whole structure Pores calculated excluding ligands

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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.78 1.77 27.3 -1.78 -0.42 21.7 77 5 2 2 3 1 1 0  
2 1.64 2.05 28.9 -0.38 -0.06 13.9 79 3 3 1 6 2 1 0  
3 1.31 1.42 51.7 -0.63 -0.34 10.8 74 3 2 3 3 3 2 1  
4 3.08 3.36 52.9 -0.85 -0.30 11.9 79 3 3 5 3 1 4 1  
5 1.31 1.44 54.5 -1.44 -0.50 18.3 77 5 3 3 2 2 2 1  
6 0.97 0.93 113.1 -1.01 -0.40 17.8 87 11 8 5 9 2 1 1  
7 1.41 1.41 124.9 -1.48 -0.30 22.7 79 11 9 5 8 4 2 1  
8 1.26 1.69 157.5 -0.68 -0.20 8.0 81 5 4 12 12 10 3 0  
9 1.00 1.00 199.7 -1.61 -0.51 20.1 82 17 15 11 10 4 4 2  
10 1.21 1.31 207.3 -1.03 -0.23 14.0 82 8 8 11 10 9 2 1  
11 1.22 1.94 210.9 -0.91 -0.29 12.5 83 8 7 16 13 10 4 1  
12 1.29 1.31 218.3 -1.02 -0.32 13.4 78 11 8 13 11 10 5 2  
13 1.41 1.63 233.2 -1.08 -0.32 15.5 81 15 12 18 10 11 1 1  
14 1.12 1.20 226.8 -1.14 -0.40 14.1 84 16 11 12 13 8 2 1  
15 1.19 1.40 241.7 -1.06 -0.20 16.6 81 16 11 11 16 7 3 1  
16 1.32 1.33 247.5 -1.38 -0.34 19.9 81 21 15 13 14 6 3 2  
17 1.44 1.51 281.2 -1.03 -0.34 14.3 83 20 14 20 18 11 2 1  
18 1.01 1.11 290.1 -1.04 -0.42 14.1 86 15 13 18 16 9 5 1  
19 1.35 1.53 291.2 -1.00 -0.21 16.4 80 20 14 17 20 11 3 1  
20 1.63 2.08 326.1 -1.51 -0.40 17.2 82 18 18 22 9 12 3 2  
21 1.37 1.47 344.5 -0.98 -0.37 14.2 85 19 16 26 22 12 5 1  
22 1.63 1.62 370.9 -0.67 -0.24 14.9 81 19 20 18 33 12 4 2  
23 1.70 1.88 374.2 -1.38 -0.41 15.8 83 23 20 24 17 12 4 2  
24 1.36 1.69 384.2 -1.41 -0.30 17.9 81 23 20 21 19 12 5 2  
25 1.54 1.68 419.2 -0.90 -0.28 15.8 81 26 17 19 31 12 5 1  
26 1.65 1.95 418.9 -0.74 -0.29 14.3 82 24 22 19 41 12 5 2  
27 1.42 1.63 437.5 -1.31 -0.43 15.6 85 22 22 30 21 13 7 2  
28 1.34 1.34 482.2 -0.72 -0.31 14.4 83 23 24 26 45 13 8 2  
29 1.51 1.78 555.0 -1.01 -0.39 14.6 83 34 20 26 34 13 6 1  
30 1.53 1.69 618.3 -0.97 -0.40 14.5 85 33 22 31 38 14 9 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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