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PDBsum entry 9bc5
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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 9bc5 calculated with MOLE 2.0 PDB id
9bc5
Pores calculated on whole structure Pores calculated excluding ligands
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26 pores, coloured by radius 26 pores, coloured by radius 26 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.96 3.18 35.7 -1.58 -0.66 14.6 80 2 0 3 0 1 0 1  DT 11 H DG 12 H DC 33 I DC 34 I DG 35 I
2 1.77 1.76 57.1 -1.65 -0.42 24.2 81 6 4 1 4 1 2 0  
3 1.96 5.06 57.5 -2.45 -0.47 28.0 82 9 5 3 3 1 1 0  DC 7 H
4 1.63 2.48 66.0 -2.10 -0.46 21.9 78 6 6 6 1 2 1 3  DC 7 H DG 8 H
5 2.64 3.77 67.7 -1.90 -0.55 20.1 81 11 4 6 0 2 0 1  DC 7 H DG 8 H DG 9 H DT 10 H DC 29 I DC 30 I DA
31 I
6 3.27 4.05 68.3 -1.53 -0.55 19.5 81 7 4 5 1 1 0 3  DT 11 H DG 12 H DG 13 H DG 35 I
7 5.11 5.45 74.1 -1.66 -0.62 17.5 83 10 2 5 0 0 0 1  DC 7 H DG 8 H DG 9 H DT 10 H DT 11 H DG 12 H DC
28 I DC 29 I DC 30 I DA 31 I DG 35 I
8 3.19 4.32 77.9 -2.18 -0.66 26.0 89 8 6 8 2 0 0 1  DT 10 H DT 11 H DG 12 H DC 28 I DG 35 I
9 3.19 4.55 81.6 -1.70 -0.64 18.5 87 7 7 9 2 0 0 2  DC 7 H DG 8 H DG 9 H DT 10 H DC 29 I DC 30 I DA
31 I
10 1.63 2.48 87.7 -1.54 -0.43 16.1 78 4 5 7 1 3 1 3  DG 6 H DC 7 H DG 8 H DG 9 H DT 10 H DA 31 I DC 33
I DC 34 I
11 1.63 2.48 89.4 -1.99 -0.42 24.5 79 13 8 7 1 4 1 2  DG 8 H DG 9 H DT 10 H DC 29 I DC 30 I
12 1.24 2.02 92.3 -0.82 -0.05 13.9 80 5 3 5 8 4 1 0  DT 28 H DC 29 H DC 8 I DG 9 I DA 10 I DG 11 I
13 1.63 2.48 94.8 -1.86 -0.50 22.5 83 9 10 10 2 2 1 3  DG 8 H DG 9 H DT 10 H DC 29 I DC 30 I
14 1.63 2.48 95.7 -1.81 -0.47 22.9 80 12 6 7 1 2 1 2  DG 8 H DG 9 H DT 10 H DT 11 H DG 12 H DC 28 I DC
29 I DC 30 I DG 35 I
15 1.78 1.77 96.3 -2.55 -0.58 29.0 82 15 4 7 0 2 0 0  DT 10 H DT 11 H DG 12 H DC 28 I DG 35 I
16 2.15 3.09 124.4 -1.63 -0.37 18.0 84 10 5 6 6 4 1 0  DG 22 H DC 23 H DT 24 H DC 25 H DG 26 H DC 22 I
DC 23 I DG 24 I
17 1.11 1.07 128.0 -1.09 -0.47 8.8 88 8 2 6 7 2 2 0  DT 28 H DC 29 H DC 8 I DG 9 I DA 10 I DG 11 I
18 2.39 2.44 140.4 -1.96 -0.63 19.5 85 15 5 11 0 2 1 1  DC 7 H DG 8 H DG 9 H DT 10 H DG 19 H DG 20 H DC
21 H DG 24 I DA 25 I DG 26 I DC 27 I DC 28 I DC
29 I DC 30 I DA 31 I
19 2.45 2.50 143.5 -2.20 -0.66 23.3 88 14 9 14 2 2 1 1  DG 19 H DG 20 H DC 21 H DG 24 I DA 25 I DG 26 I
DC 27 I DC 28 I
20 2.67 2.76 151.0 -1.62 -0.69 13.4 90 10 3 13 0 1 0 1  DC 7 H DG 8 H DG 9 H DT 10 H DG 19 H DG 20 H DC
21 H DG 22 H DC 23 H DT 24 H DC 25 H DG 26 H DC
22 I DC 23 I DG 24 I DA 25 I DG 26 I DC 27 I DC
28 I DC 29 I DC 30 I DA 31 I
21 1.69 1.67 151.4 -2.03 -0.53 21.1 87 14 4 8 1 3 1 0  DG 22 H DC 23 H DT 24 H DC 25 H DG 26 H DC 22 I
DC 23 I DG 24 I
22 2.78 2.78 154.1 -1.85 -0.71 17.1 92 9 7 15 2 1 0 1  DG 19 H DG 20 H DC 21 H DG 22 H DC 23 H DT 24 H
DC 25 H DG 26 H DC 22 I DC 23 I DG 24 I DA 25 I
DG 26 I DC 27 I DC 28 I
23 1.68 1.67 156.0 -1.75 -0.60 16.4 92 13 2 11 1 1 0 0  DT 10 H DT 11 H DG 12 H DG 19 H DG 20 H DC 21 H
DG 22 H DC 23 H DT 24 H DC 25 H DG 26 H DC 22 I
DC 23 I DG 24 I DA 25 I DG 26 I DC 27 I DC 28 I
DG 35 I
24 2.44 2.49 160.5 -2.04 -0.61 22.5 84 18 6 11 1 3 1 1  DT 10 H DT 11 H DG 12 H DG 19 H DG 20 H DC 21 H
DG 24 I DA 25 I DG 26 I DC 27 I DC 28 I DG 35 I
25 2.44 2.75 167.4 -2.39 -0.66 25.4 85 21 11 14 0 2 1 1  DT 10 H DT 11 H DG 12 H DG 13 H DG 19 H DG 20 H
DC 21 H DG 24 I DA 25 I DG 26 I DC 27 I DC 28 I
26 1.16 1.16 29.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  DT 1 H DG 2 H DG 3 H DC 4 H DG 5 H DC 39 I DC 40
I DA 41 I

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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