PDBsum entry 9b8r Go to PDB code:  Pore analysis for: 9b8r calculated with MOLE 2.0 PDB id 9b8r Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   16 pores, coloured by radius 19 pores, coloured by radius 19 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.09 3.31 34.7 -1.89 -0.52 18.2 72 2 4 3 1 4 2 0   2 2.33 2.39 38.0 -0.97 0.01 15.0 76 2 1 2 3 2 0 0  DT 8 P DG 9 P DT 3 T DA 4 T 3 2.76 4.52 38.1 -1.25 -0.39 18.6 78 2 4 4 6 3 3 0   4 1.35 1.46 42.2 -0.86 -0.10 9.3 83 2 2 8 3 3 1 0  DT 3 T 5 2.60 2.76 44.3 -2.09 -0.69 24.4 83 5 3 3 1 1 0 0  DT 2 P DG 3 P DT 4 P DT 5 P DG 6 P DC 7 P DT 3 T DA 4 T DG 5 T DC 6 T DG 8 T 6 2.67 3.13 49.2 -2.50 -0.29 33.8 69 5 3 0 2 4 0 0   7 1.51 1.52 62.5 -1.59 -0.79 17.4 88 7 3 4 1 0 1 0  DT 2 P DG 3 P DT 4 P DT 5 P DC 6 T DG 8 T DC 12 T DA 13 T DG 14 T 8 1.50 1.49 64.7 -1.79 -0.71 18.9 81 9 4 4 0 1 1 0  DG 3 P DT 4 P DT 5 P DG 6 P DC 7 P DT 3 T DA 4 T DG 5 T DC 12 T DA 13 T DG 14 T 9 1.54 1.69 67.2 -2.27 -0.28 27.4 74 4 5 2 1 4 0 0  DT 8 P DG 9 P DC 10 P DT 3 T DA 4 T 10 2.00 4.07 67.1 -2.19 -0.59 28.4 85 6 6 2 3 1 1 0  DT 2 P DG 3 P DT 4 P DT 5 P DC 6 T DG 8 T 11 1.27 1.33 68.6 -2.27 -0.62 29.6 82 7 7 1 3 1 1 0  DT 5 P DG 6 P DC 7 P DT 3 T DA 4 T DG 5 T DC 6 T 12 1.19 1.27 70.3 -0.42 -0.20 8.0 85 3 3 6 7 3 3 0  DT 3 T 13 1.55 1.71 69.4 -1.70 -0.22 25.3 72 7 5 3 5 4 0 0   14 2.97 2.97 73.8 -1.92 -0.62 19.8 78 6 4 7 3 3 2 0  DT 2 P DG 3 P DT 4 P DT 5 P DG 6 P DC 7 P DA 4 T DG 5 T DC 6 T DG 8 T 15 1.97 3.88 74.6 -2.24 -0.58 27.7 81 8 7 3 2 2 1 0  DT 5 P DG 6 P DC 7 P DT 3 T DA 4 T DG 5 T DC 6 T 16 2.21 2.37 89.6 -1.43 -0.42 22.4 81 8 3 2 2 1 0 0  DT 2 P DG 3 P DT 4 P DT 5 P DG 6 P DC 7 P DT 3 T DA 4 T DG 5 T DC 6 T DG 8 T 17 1.52 2.86 114.7 -0.94 -0.22 21.9 78 9 7 1 10 5 1 0   18 1.31 1.93 124.4 -1.52 -0.40 21.6 79 12 10 8 9 4 4 3  SF4 1401 E DT 5 P DG 6 P DC 7 P DA 4 T DG 5 T DC 6 T 19 1.17 1.39 141.1 -2.05 -0.44 24.6 79 9 11 5 4 5 3 0  DT 5 P DG 6 P DC 7 P DT 8 P DG 9 P DC 10 P DA 4 T DG 5 T DC 6 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.