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PDBsum entry 9asm

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 9asm calculated with MOLE 2.0 PDB id
9asm
Pores calculated on whole structure Pores calculated excluding ligands

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10 pores, coloured by radius 10 pores, coloured by radius 10 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.44 1.74 33.8 -1.86 -0.54 24.4 77 5 1 1 1 2 2 0  U 95 E C 96 E U 97 E
2 2.31 2.31 37.8 -2.02 -0.21 13.4 72 3 1 2 2 3 1 0  A 16 E U 116 E A 117 E G 118 E A 119 E C 120 E U
121 E U 122 E G 123 E
3 3.11 3.23 46.5 -1.77 -0.69 18.6 84 4 0 2 0 0 1 0  G 34 E G 35 E U 36 E A 37 E G 38 E U 39 E A 93 E
A 94 E U 95 E C 96 E U 97 E A 98 E U 99 E U 100 E
G 101 E C 102 E C 103 E
4 3.67 3.92 49.9 -1.31 -0.76 11.7 78 4 0 1 0 0 0 0  U 25 E C 26 E A 27 E G 28 E G 30 E U 31 E G 32 E
A 33 E G 34 E G 35 E U 36 E A 37 E G 38 E U 39 E
A 93 E A 94 E U 95 E C 96 E U 97 E A 98 E U 99 E
C 102 E C 103 E U 104 E A 114 E G 115 E U 116 E
5 3.12 3.24 52.7 -1.99 -0.63 22.7 83 6 2 3 0 2 2 0  G 34 E G 35 E U 36 E U 95 E C 96 E U 97 E A 98 E
U 99 E U 100 E G 101 E C 102 E
6 1.44 1.73 52.6 -2.00 -0.62 24.9 77 7 2 0 1 0 1 0  G 34 E G 35 E U 36 E A 37 E G 38 E U 39 E A 93 E
A 94 E U 95 E C 96 E U 97 E A 98 E C 103 E
7 3.84 4.02 53.2 -0.98 -0.66 12.8 77 5 2 1 1 2 1 0  G 34 E G 35 E U 36 E A 37 E G 38 E U 39 E A 93 E
A 94 E U 95 E C 96 E U 97 E A 98 E C 103 E
8 1.45 1.73 56.4 -2.67 -0.58 31.8 82 8 2 2 1 0 1 0  G 34 E G 35 E U 36 E U 97 E A 98 E U 99 E U 100 E
G 101 E C 102 E
9 1.46 1.73 61.6 -2.28 -0.63 25.9 78 8 2 1 1 0 1 0  U 25 E C 26 E A 27 E G 28 E G 30 E U 31 E G 32 E
A 33 E G 34 E G 35 E U 36 E U 97 E A 98 E U 99 E
C 102 E C 103 E U 104 E A 114 E G 115 E U 116 E
10 3.69 3.94 62.3 -1.59 -0.67 17.6 78 6 2 2 1 2 1 0  U 25 E C 26 E A 27 E G 28 E G 30 E U 31 E G 32 E
A 33 E G 34 E G 35 E U 36 E U 95 E C 96 E U 97 E
A 98 E U 99 E C 102 E C 103 E U 104 E A 114 E G
115 E U 116 E

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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