PDBsum entry 8zyu Go to PDB code:  Tunnel analysis for: 8zyu calculated with MOLE 2.0 PDB id 8zyu Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.15 3.08 44.4 0.88 0.42 5.4 80 3 1 4 14 5 0 0  SRW 500 R 2 1.11 1.12 45.6 1.64 0.55 3.5 82 1 0 3 14 4 0 0  SRW 500 R 3 1.16 3.06 54.4 0.89 0.44 3.9 82 2 0 5 14 5 1 0  SRW 500 R Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.