PDBsum entry 8zmd

Pore analysis for: 8zmd calculated with

MOLE 2.0

PDB id

8zmd

Pores calculated on whole structure

Pores calculated excluding ligands

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13 pores, coloured by radius

13 pores, coloured by radius

13 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.12

1.84

36.7

0.13

0.09

14.0

79

2

2

1

11

0

0

0

2

1.32

1.37

55.3

0.83

0.02

7.2

77

3

1

2

11

0

1

1

3

1.22

1.43

55.4

0.11

-0.20

8.3

82

4

1

4

8

0

2

1

4

1.20

4.83

92.4

1.50

0.81

2.9

77

2

0

2

15

7

0

1

5

1.26

1.81

107.9

-1.11

-0.26

14.6

81

11

3

8

9

4

1

2

6

1.30

1.69

117.4

-0.85

-0.25

13.3

84

10

5

9

8

4

0

2

7

1.23

1.40

118.8

-1.03

-0.29

12.7

82

12

3

10

11

4

3

2

8

1.21

1.34

128.3

-0.84

-0.30

11.8

85

11

5

11

10

4

2

2

9

1.22

2.14

144.1

-1.59

-0.37

17.0

85

10

4

9

7

2

5

0

10

1.19

4.82

149.0

0.70

0.48

7.4

80

5

3

6

21

9

0

1

11

1.18

1.43

150.6

0.02

0.18

11.2

83

10

2

8

17

4

1

1

12

1.27

2.10

169.8

-1.20

-0.27

17.4

83

14

8

8

8

4

3

2

13

1.19

1.39

184.2

-0.54

-0.09

14.1

80

13

8

7

18

7

3

2

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.