 |
PDBsum entry 8zf6
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 8zf6 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
8zf6
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
4 tunnels,
coloured by tunnel radius |
|
4 tunnels,
coloured by
tunnel radius
|
4 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.25 |
1.39 |
15.4 |
-0.98 |
-0.36 |
19.3 |
84 |
|
2 |
2 |
1 |
4 |
0 |
0 |
0 |
|
|
 |
|
2 |
 |
1.38 |
1.43 |
15.4 |
-0.48 |
0.11 |
9.2 |
69 |
2 |
2 |
1 |
0 |
4 |
0 |
1 |
|
|
3 |
 |
1.14 |
1.14 |
16.0 |
-0.20 |
0.08 |
14.1 |
63 |
1 |
1 |
0 |
3 |
3 |
1 |
0 |
|
 |
4 |
 |
1.20 |
2.69 |
17.8 |
2.19 |
0.58 |
1.3 |
79 |
0 |
0 |
2 |
7 |
0 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program