PDBsum entry 8zd1

Tunnel analysis for: 8zd1 calculated with

MOLE 2.0

PDB id

8zd1

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

7 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.44

1.44

15.6

-0.54

-0.01

11.6

77

2

0

1

2

2

1

0

2

1.44

1.44

15.7

-0.46

-0.10

11.5

73

1

1

0

2

2

1

0

3

1.51

1.56

15.8

-1.53

-0.31

24.1

80

2

2

0

2

1

1

0

4

1.25

3.30

16.7

-0.06

0.07

4.4

88

1

0

2

4

2

0

0

5

1.36

2.31

19.2

0.79

0.36

3.5

86

1

0

2

6

2

0

0

6

1.15

1.18

19.5

0.13

0.25

12.4

80

2

0

2

4

3

0

0

7

0.93

1.22

16.1

-0.07

-0.11

3.1

86

0

1

1

3

2

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.