PDBsum entry 8z9o

Tunnel analysis for: 8z9o calculated with

MOLE 2.0

PDB id

8z9o

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.55

1.78

26.8

-1.35

-0.32

17.1

85

2

2

2

4

3

0

0

2

1.54

1.76

28.2

-0.39

-0.41

9.4

84

1

1

4

3

1

1

2

3

1.54

1.77

30.5

-0.50

-0.41

7.5

80

2

1

4

2

2

2

2

4

1.32

2.01

24.3

-1.62

0.04

15.9

72

2

2

1

1

4

1

0

5

1.15

1.16

29.2

-0.92

0.06

20.3

68

3

3

0

2

4

0

0

6

1.64

1.64

16.7

-0.47

0.03

12.7

81

1

1

1

4

3

1

0

CLR 401 R

7

1.34

1.54

15.1

0.32

0.21

14.6

75

1

2

0

3

2

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.