 |
PDBsum entry 8z3m
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 8z3m calculated with MOLE 2.0
|
PDB id
|
|
|
|
8z3m
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
7 pores,
coloured by radius |
 |
7 pores,
coloured by radius
|
7 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.30 |
1.65 |
56.8 |
-0.88 |
-0.17 |
11.0 |
84 |
 |
1 |
4 |
4 |
3 |
2 |
2 |
0 |
 |
|
 |
 |
2 |
 |
1.12 |
1.39 |
62.8 |
-0.80 |
-0.24 |
20.4 |
87 |
4 |
6 |
4 |
9 |
1 |
0 |
1 |
|
 |
3 |
 |
1.53 |
1.77 |
106.2 |
-1.46 |
-0.36 |
18.4 |
85 |
14 |
3 |
10 |
6 |
4 |
1 |
0 |
|
 |
4 |
 |
1.53 |
1.77 |
110.6 |
-1.29 |
-0.35 |
16.2 |
87 |
15 |
4 |
11 |
8 |
3 |
1 |
0 |
|
 |
5 |
 |
1.31 |
2.45 |
140.3 |
-1.98 |
-0.49 |
26.9 |
85 |
14 |
8 |
7 |
5 |
1 |
1 |
0 |
|
 |
6 |
 |
1.38 |
2.22 |
141.5 |
-1.79 |
-0.53 |
22.3 |
86 |
14 |
10 |
9 |
5 |
4 |
1 |
0 |
|
 |
7 |
 |
1.32 |
2.44 |
148.7 |
-1.68 |
-0.43 |
24.5 |
86 |
16 |
10 |
8 |
8 |
1 |
1 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |