PDBsum entry 8yw3 Go to PDB code:  Pore analysis for: 8yw3 calculated with MOLE 2.0 PDB id 8yw3 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   15 pores, coloured by radius 16 pores, coloured by radius 16 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 2.96 25.4 -1.12 -0.13 23.2 84 5 2 2 3 0 0 0   2 2.17 2.30 26.8 -0.96 -0.28 13.6 80 5 1 2 3 0 0 0   3 1.19 1.48 32.7 -1.17 -0.18 24.2 82 4 3 2 4 0 0 0   4 2.55 3.01 33.2 -1.49 -0.44 8.6 85 4 0 6 4 1 0 0   5 1.17 2.83 35.3 -1.16 -0.27 22.9 83 4 3 2 4 0 0 0   6 1.39 1.58 38.4 -2.21 -0.26 26.2 81 7 3 3 3 2 0 0   7 1.39 1.59 44.6 -1.85 -0.25 23.5 82 7 3 3 1 3 0 0   8 1.18 2.77 46.9 -1.13 -0.34 15.4 87 3 2 7 5 1 0 0   9 1.61 2.51 53.2 -2.18 -0.32 27.7 82 7 6 4 4 2 0 0   10 1.89 2.00 90.6 -2.34 -0.45 29.2 86 8 5 8 5 2 0 0   11 1.42 1.39 93.3 -1.56 -0.45 19.3 82 8 5 7 6 5 1 2   12 1.43 1.37 100.3 -1.52 -0.39 20.0 83 9 8 9 5 5 1 2   13 1.77 2.11 116.0 -2.17 -0.44 25.3 84 10 8 9 6 4 0 0   14 1.72 2.47 119.6 -2.02 -0.36 25.3 86 11 11 12 5 4 0 0   15 1.85 2.63 159.5 -1.56 -0.42 20.4 89 11 10 13 8 3 0 0   16 1.21 1.27 39.2 -0.62 -0.40 15.1 78 3 3 0 6 4 0 0  AIB 2 P Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.