PDBsum entry 8ytc

Pore analysis for: 8ytc calculated with

MOLE 2.0

PDB id

8ytc

Pores calculated on whole structure

Pores calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

10 pores, coloured by radius

10 pores, coloured by radius

10 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.19

1.18

32.5

-1.64

-0.35

20.5

79

3

3

2

1

2

1

0

2

1.33

1.49

35.2

0.45

-0.01

10.9

71

0

3

2

6

3

0

1

3

1.48

1.80

42.6

0.48

0.01

11.3

69

1

3

2

6

3

0

1

4

1.43

2.27

45.7

-0.29

0.11

11.8

77

5

1

3

6

2

2

3

5

1.48

2.26

59.2

0.27

0.28

11.3

75

8

1

4

7

5

1

6

6

1.42

2.24

73.4

0.57

0.35

8.5

74

8

0

6

8

4

3

8

7

1.24

1.25

83.3

-0.68

-0.01

16.5

76

10

3

4

7

7

1

4

8

1.33

1.49

140.1

-0.45

-0.10

12.7

74

9

2

6

10

6

1

5

9

1.56

1.97

142.2

-0.34

-0.06

12.8

73

10

3

5

9

8

0

6

10

1.45

2.19

156.5

-0.05

0.04

10.9

72

10

2

7

10

7

2

8

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.