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PDBsum entry 8yn6
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Tunnel analysis for: 8yn6 calculated with  MOLE 2.0
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PDB id
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8yn6
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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8 tunnels,
coloured by tunnel radius |
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9 tunnels,
coloured by
tunnel radius
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9 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.59 |
3.23 |
23.9 |
-1.63 |
-0.34 |
16.3 |
87 |
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4 |
2 |
4 |
2 |
2 |
0 |
0 |
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2 |
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1.75 |
1.86 |
26.3 |
-1.75 |
-0.40 |
10.1 |
87 |
3 |
2 |
4 |
2 |
2 |
0 |
0 |
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3 |
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1.48 |
1.64 |
16.7 |
-1.67 |
-0.32 |
29.4 |
85 |
3 |
2 |
1 |
3 |
0 |
0 |
0 |
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4 |
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1.50 |
1.64 |
16.9 |
-1.71 |
-0.54 |
25.1 |
89 |
3 |
3 |
2 |
3 |
0 |
0 |
0 |
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5 |
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1.53 |
2.37 |
19.0 |
-1.66 |
-0.32 |
29.0 |
85 |
3 |
2 |
1 |
3 |
0 |
0 |
0 |
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6 |
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1.52 |
2.34 |
29.1 |
-1.30 |
-0.37 |
22.7 |
84 |
4 |
2 |
2 |
5 |
0 |
0 |
0 |
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7 |
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1.58 |
3.17 |
23.3 |
-0.23 |
0.83 |
6.0 |
54 |
1 |
2 |
0 |
2 |
11 |
0 |
0 |
ITF 701 R
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8 |
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1.31 |
1.98 |
31.3 |
-0.25 |
0.68 |
6.3 |
63 |
1 |
3 |
1 |
5 |
11 |
0 |
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ITF 701 R
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9 |
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1.23 |
1.24 |
18.6 |
1.67 |
0.84 |
1.4 |
62 |
0 |
0 |
0 |
4 |
2 |
0 |
0 |
CLR 702 R
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program