PDBsum entry 8ykx Go to PDB code:  Pore analysis for: 8ykx calculated with MOLE 2.0 PDB id 8ykx Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.56 1.69 34.6 -1.53 -0.39 12.6 88 4 0 6 1 2 1 0   2 1.57 1.69 37.8 -1.21 -0.36 13.1 88 5 1 5 2 2 1 0   3 2.41 3.39 104.9 -1.18 -0.38 17.1 83 12 5 7 7 3 2 3   4 2.46 2.52 110.9 -1.38 -0.43 20.4 80 10 8 5 4 3 2 3   5 2.63 2.88 110.9 -1.33 -0.48 20.0 84 9 8 4 7 2 0 1   6 1.90 2.68 126.5 -1.86 -0.50 26.0 85 11 10 3 5 1 1 0   7 2.50 3.47 139.0 -1.30 -0.37 18.1 82 14 7 9 7 5 2 3   8 2.79 2.79 159.6 -1.57 -0.42 18.3 84 12 10 11 6 5 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.