PDBsum entry 8ykd Go to PDB code:  Pore analysis for: 8ykd calculated with MOLE 2.0 PDB id 8ykd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   10 pores, coloured by radius 10 pores, coloured by radius 10 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.66 29.4 -1.83 -0.35 26.6 87 4 3 2 2 0 0 0   2 2.15 2.17 31.2 -1.11 -0.22 18.8 79 5 2 0 3 1 1 0   3 2.25 2.60 62.3 -2.47 -0.59 26.8 86 4 5 3 0 1 0 0   4 1.40 1.40 73.5 -1.23 -0.25 13.6 84 7 1 7 2 3 1 0   5 1.32 3.59 74.8 -1.27 -0.40 16.7 84 7 6 7 4 3 1 2   6 1.44 1.43 75.4 -1.43 -0.33 13.8 89 5 3 9 3 2 1 0   7 1.59 3.12 96.3 -2.32 -0.66 17.2 86 7 5 9 0 2 0 0   8 1.22 1.62 105.2 -1.96 -0.54 20.5 86 9 7 10 4 2 0 0   9 1.59 3.09 141.7 -1.79 -0.52 18.7 86 10 9 14 2 4 0 2   10 1.56 3.12 162.1 -1.74 -0.56 17.5 87 10 5 11 3 2 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.