PDBsum entry 8yk0 Go to PDB code:  Pore analysis for: 8yk0 calculated with MOLE 2.0 PDB id 8yk0 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 10 pores, coloured by radius 10 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.44 1.44 25.8 0.26 -0.06 8.2 86 3 0 4 4 0 1 1   2 2.31 2.58 26.2 -0.72 -0.29 20.0 82 5 2 1 5 1 0 0   3 1.52 1.57 39.2 1.43 0.29 3.3 76 1 0 0 11 2 0 1  CLR 401 A MW9 403 A 4 1.44 1.44 45.6 0.27 -0.10 8.6 88 3 0 4 7 0 0 1   5 2.00 2.11 48.5 -0.23 -0.21 11.4 93 5 0 5 5 0 1 1   6 1.50 1.57 61.5 1.08 0.53 7.2 79 4 0 1 11 7 0 1  MW9 403 A MW9 402 B 7 1.78 1.79 62.5 0.46 0.26 6.7 73 3 0 1 12 6 0 0  CLR 401 A MW9 402 B 8 1.49 1.49 65.5 0.96 0.34 5.9 73 3 0 3 14 3 1 1  CLR 401 A MW9 402 B 9 1.15 1.39 292.3 -0.56 -0.11 14.8 73 14 10 6 17 13 2 2  CLR 401 A CLR 405 A MW9 401 B MW9 402 B CLR 405 B CLR 406 B CLR 407 B CLR 408 B 10 2.25 3.20 96.2 -1.17 -0.50 15.1 88 7 3 6 2 1 2 2   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.