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PDBsum entry 8yii
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Pore analysis for: 8yii calculated with  MOLE 2.0
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PDB id
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8yii
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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30 pores,
coloured by radius |
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28 pores,
coloured by radius
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28 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.69 |
1.70 |
26.7 |
-2.24 |
-0.59 |
31.6 |
79 |
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3 |
3 |
0 |
2 |
0 |
0 |
0 |
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G 1 C G 98 C G 99 C A 100 C C 101 C C 102 C U 103
C
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2 |
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2.67 |
2.85 |
29.6 |
-1.55 |
-0.59 |
15.3 |
76 |
3 |
1 |
1 |
1 |
1 |
0 |
0 |
G 1 C G 2 C U 3 C U 4 C G 94 C G 95 C A 96 C G 97
C G 98 C G 99 C A 100 C C 101 C C 102 C
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3 |
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1.33 |
1.33 |
30.3 |
-1.65 |
-0.47 |
19.0 |
85 |
5 |
2 |
2 |
1 |
0 |
1 |
0 |
ADP 1801 A MG 1804 A G 29 C G 30 C
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4 |
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1.38 |
1.51 |
35.0 |
-1.05 |
-0.41 |
8.5 |
90 |
3 |
1 |
8 |
6 |
0 |
2 |
0 |
C 21 C C 75 C A 76 C
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5 |
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2.13 |
3.00 |
43.0 |
-1.11 |
-0.77 |
11.8 |
91 |
2 |
2 |
1 |
1 |
0 |
0 |
0 |
C 41 C C 42 C G 43 C C 44 C C 54 C U 55 C U 56 C
C 57 C C 58 C
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6 |
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1.26 |
1.64 |
45.1 |
-0.49 |
-0.26 |
14.0 |
85 |
3 |
3 |
4 |
6 |
2 |
0 |
0 |
C 81 C U 82 C G 83 C
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7 |
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1.26 |
1.81 |
45.3 |
-1.93 |
-0.58 |
18.9 |
84 |
5 |
1 |
5 |
1 |
1 |
1 |
0 |
U 18 C C 19 C G 79 C U 80 C C 81 C U 82 C G 83 C
C 85 C G 88 C C 89 C
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8 |
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2.67 |
2.84 |
46.0 |
-1.21 |
-0.65 |
15.3 |
81 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 1 C G 2 C U 3 C U 4 C C 5 C G 6 C C 7 C U 8 C C
9 C C 10 C C 89 C G 90 C G 91 C A 92 C A 93 C G
94 C G 95 C A 96 C G 97 C G 98 C G 99 C A 100 C C
101 C C 102 C
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9 |
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1.27 |
1.85 |
48.1 |
-1.95 |
-0.57 |
20.6 |
84 |
5 |
1 |
5 |
1 |
1 |
1 |
0 |
G 12 C G 13 C C 14 C U 17 C U 18 C G 83 C C 85 C
G 86 C A 87 C
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10 |
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1.37 |
1.51 |
48.4 |
-1.59 |
-0.58 |
15.4 |
88 |
4 |
1 |
8 |
4 |
0 |
2 |
0 |
U 18 C C 19 C A 20 C C 21 C G 24 C C 25 C A 76 C
G 77 C G 79 C U 80 C G 88 C C 89 C
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11 |
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1.88 |
1.88 |
50.6 |
-0.84 |
-0.73 |
7.6 |
73 |
4 |
2 |
1 |
1 |
1 |
0 |
0 |
U 3 C U 4 C C 5 C G 6 C C 7 C C 9 C C 10 C A 87 C
G 88 C C 89 C G 90 C G 91 C A 92 C A 93 C G 94 C
G 95 C
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12 |
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1.30 |
1.75 |
59.4 |
-1.73 |
-0.62 |
17.5 |
84 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
U 8 C C 9 C C 10 C C 11 C G 12 C G 13 C C 14 C U
17 C U 18 C G 83 C C 85 C G 86 C A 87 C G 88 C C
89 C G 90 C G 91 C
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13 |
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2.15 |
2.43 |
63.9 |
-0.75 |
-0.62 |
15.9 |
85 |
2 |
7 |
0 |
5 |
0 |
0 |
0 |
C 25 C G 26 C C 27 C U 28 C G 30 C A 31 C A 32 C
U 71 C U 72 C
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14 |
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1.54 |
1.54 |
68.7 |
-1.63 |
-0.57 |
20.8 |
89 |
6 |
4 |
5 |
2 |
1 |
0 |
0 |
U 18 C C 19 C A 20 C G 24 C C 25 C C 75 C A 76 C
G 77 C G 79 C U 80 C G 88 C C 89 C
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15 |
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2.08 |
2.99 |
72.7 |
-2.31 |
-0.67 |
24.5 |
84 |
7 |
4 |
5 |
1 |
1 |
0 |
0 |
G 30 C A 31 C A 32 C A 33 C A 34 C U 35 C C 36 C
U 37 C U 38 C A 39 C A 40 C C 41 C C 42 C C 58 C
G 59 C U 61 C G 63 C C 64 C U 65 C U 66 C
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16 |
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2.98 |
3.11 |
73.4 |
-2.02 |
-0.74 |
19.2 |
80 |
5 |
2 |
3 |
0 |
1 |
0 |
0 |
G 30 C A 31 C A 32 C A 33 C A 34 C U 35 C C 36 C
U 37 C U 38 C A 39 C A 40 C C 41 C C 42 C G 43 C
C 44 C C 54 C U 55 C U 56 C C 57 C C 58 C G 59 C
C 60 C U 61 C G 63 C C 64 C U 65 C U 66 C
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17 |
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2.19 |
2.47 |
76.4 |
-0.63 |
-0.62 |
9.9 |
91 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
U 8 C C 9 C C 10 C C 11 C G 12 C G 13 C C 14 C U
17 C U 18 C C 25 C G 26 C G 79 C U 80 C C 81 C U
82 C C 85 C G 86 C A 87 C G 88 C C 89 C G 90 C G
91 C
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18 |
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2.03 |
2.90 |
77.8 |
-0.53 |
-0.46 |
11.4 |
89 |
2 |
4 |
4 |
7 |
0 |
0 |
0 |
C 21 C C 25 C G 26 C C 27 C U 71 C U 72 C U 73 C
C 74 C C 75 C A 76 C G 77 C
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19 |
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2.18 |
2.20 |
99.7 |
-1.15 |
-0.72 |
11.6 |
85 |
5 |
3 |
4 |
2 |
1 |
0 |
0 |
U 3 C U 4 C C 5 C G 6 C C 7 C C 9 C C 10 C C 11 C
G 12 C G 13 C C 14 C U 17 C U 18 C C 19 C A 20 C
C 21 C A 22 C G 23 C G 24 C C 25 C C 75 C A 76 C
G 77 C U 80 C C 81 C U 82 C C 85 C G 86 C A 87 C
G 88 C C 89 C G 90 C G 91 C A 92 C A 93 C G 94 C
G 95 C
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20 |
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2.18 |
2.96 |
108.0 |
-1.34 |
-0.61 |
18.1 |
86 |
5 |
8 |
3 |
6 |
1 |
0 |
0 |
C 25 C G 26 C C 27 C U 28 C A 32 C A 33 C A 34 C
U 35 C C 36 C U 37 C U 38 C A 39 C A 40 C C 41 C
C 42 C C 58 C G 59 C U 61 C G 63 C C 64 C U 65 C
U 66 C U 71 C U 72 C
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21 |
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2.98 |
3.11 |
108.5 |
-1.33 |
-0.73 |
15.5 |
80 |
4 |
5 |
2 |
2 |
1 |
0 |
0 |
C 25 C G 26 C C 27 C U 28 C A 32 C A 33 C A 34 C
U 35 C C 36 C U 37 C U 38 C A 39 C A 40 C C 41 C
C 42 C G 43 C C 44 C C 54 C U 55 C U 56 C C 57 C
C 58 C G 59 C C 60 C U 61 C G 63 C C 64 C U 65 C
U 66 C U 71 C U 72 C
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22 |
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2.04 |
2.38 |
110.5 |
-1.30 |
-0.27 |
16.9 |
79 |
7 |
8 |
5 |
6 |
6 |
1 |
0 |
U 3 C U 4 C A 93 C G 94 C
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23 |
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1.28 |
2.70 |
135.8 |
-0.88 |
-0.39 |
17.5 |
81 |
7 |
9 |
5 |
9 |
3 |
0 |
1 |
ADP 1801 A C 25 C G 26 C C 27 C U 28 C G 29 C G
30 C A 31 C U 71 C U 72 C
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24 |
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1.89 |
2.35 |
136.5 |
-0.47 |
-0.47 |
8.9 |
88 |
2 |
8 |
4 |
9 |
4 |
1 |
0 |
G 13 C C 14 C G 15 C C 16 C U 17 C U 18 C C 25 C
G 26 C G 79 C U 80 C C 81 C
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25 |
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1.32 |
1.34 |
139.9 |
-1.18 |
-0.52 |
17.6 |
82 |
10 |
10 |
5 |
7 |
3 |
1 |
0 |
ADP 1801 A MG 1804 A C 25 C G 26 C C 27 C U 28 C
G 29 C G 30 C A 31 C U 71 C U 72 C
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26 |
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1.22 |
2.71 |
147.5 |
-1.25 |
-0.39 |
16.7 |
82 |
9 |
5 |
12 |
8 |
3 |
2 |
1 |
ADP 1801 A C 21 C C 25 C G 26 C C 27 C U 28 C G
29 C G 30 C A 31 C U 73 C C 74 C C 75 C A 76 C G
77 C
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27 |
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1.86 |
2.42 |
163.7 |
-1.07 |
-0.44 |
14.8 |
83 |
6 |
11 |
5 |
7 |
5 |
1 |
0 |
G 13 C C 14 C G 15 C C 16 C U 17 C U 18 C C 19 C
G 79 C U 80 C C 81 C G 88 C C 89 C
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28 |
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1.30 |
2.71 |
174.4 |
-1.13 |
-0.44 |
17.1 |
80 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
ADP 1801 A U 8 C C 9 C C 10 C C 11 C G 12 C G 13
C C 14 C U 17 C U 18 C C 19 C A 20 C C 21 C A 22
C G 23 C G 24 C C 25 C G 26 C C 27 C U 28 C G 29
C G 30 C A 31 C U 73 C C 74 C C 75 C A 76 C U 80
C C 81 C U 82 C C 85 C G 86 C A 87 C G 88 C C 89
C G 90 C G 91 C
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program