PDBsum entry 8yh2 Go to PDB code:  Pore analysis for: 8yh2 calculated with MOLE 2.0 PDB id 8yh2 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   15 pores, coloured by radius 16 pores, coloured by radius 16 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.73 2.97 31.3 -1.86 -0.57 23.7 90 4 4 5 3 1 0 0   2 1.82 3.06 31.3 -1.55 -0.51 20.3 86 5 2 3 4 0 0 0   3 2.57 3.36 33.3 -1.16 -0.41 13.7 84 5 1 5 4 1 1 0   4 1.31 1.48 34.4 -1.82 -0.40 26.4 80 6 2 1 4 0 0 0   5 2.65 3.42 38.6 -1.42 -0.45 16.7 81 5 3 5 1 2 1 0   6 1.81 3.06 40.0 -1.87 -0.54 23.5 85 5 4 4 2 1 0 0   7 2.98 3.18 44.8 -2.15 -0.17 22.4 77 6 0 2 2 3 0 0   8 1.34 1.62 45.8 -1.30 -0.39 21.4 88 7 4 3 5 1 0 0   9 1.35 1.63 47.8 -0.78 -0.29 14.1 83 8 1 3 6 1 1 0   10 1.68 1.90 58.3 -2.25 -0.42 26.6 84 9 4 3 4 0 1 0   11 1.43 4.77 81.3 -2.00 -0.15 18.4 77 7 3 5 2 5 1 0   12 1.63 1.64 128.7 -1.27 -0.32 20.3 84 9 7 6 8 1 2 0   13 1.67 1.67 131.5 -1.03 -0.20 22.4 81 12 7 3 8 2 1 0   14 1.39 1.39 135.7 -1.18 -0.31 17.9 83 11 5 9 9 3 2 2   15 1.39 1.39 146.0 -1.28 -0.38 18.6 82 14 7 8 7 3 2 2   16 1.10 1.47 33.3 1.01 0.42 4.8 82 2 0 5 9 3 0 1  ADN 801 R Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.