PDBsum entry 8ygc Go to PDB code:  Pore analysis for: 8ygc calculated with MOLE 2.0 PDB id 8ygc Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   25 pores, coloured by radius 25 pores, coloured by radius 25 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 3.24 64.5 0.14 0.28 4.8 76 0 2 4 10 11 0 0   2 1.23 1.29 69.9 -2.25 -0.73 21.0 88 2 9 5 1 1 0 0   3 1.71 2.94 74.0 -1.82 -0.47 27.6 84 10 8 8 8 2 0 0   4 3.17 4.20 75.5 -2.37 -0.61 21.1 83 9 7 10 0 5 0 0   5 1.67 3.38 97.1 -2.55 -0.59 35.0 84 14 11 7 4 2 0 0   6 1.34 1.38 103.0 -1.02 0.14 10.3 71 1 8 8 11 20 0 0   7 1.49 1.55 109.4 -2.20 -0.44 25.7 81 12 7 8 4 5 0 0   8 1.75 2.92 116.7 -2.63 -0.51 27.1 85 14 16 15 6 6 0 0   9 1.34 1.38 126.7 -1.47 -0.15 15.1 80 6 8 12 8 11 0 1   10 1.18 3.29 136.1 -0.87 0.15 9.6 71 2 10 7 16 19 0 0   11 1.98 2.44 140.4 -1.62 -0.13 12.7 76 5 7 13 8 11 1 1   12 1.59 2.57 164.7 -1.44 -0.32 17.5 80 12 11 10 5 10 0 0   13 1.26 3.27 172.0 -1.16 -0.12 13.1 79 6 9 12 16 10 1 1   14 1.35 1.37 236.8 -1.62 -0.15 18.0 78 12 14 15 9 18 0 0   15 1.27 1.28 247.3 -1.53 -0.27 16.2 80 12 18 19 9 16 0 0   16 1.79 1.98 255.4 -1.77 -0.29 17.5 77 13 19 18 7 17 0 0   17 1.22 3.10 274.8 -1.25 -0.20 15.1 80 12 19 18 15 15 0 0   18 2.02 2.52 295.9 -2.33 -0.43 23.3 79 18 18 20 6 12 1 1   19 1.79 1.92 306.4 -2.14 -0.50 20.5 81 18 22 24 6 10 1 1   20 1.59 2.70 325.8 -2.23 -0.35 23.5 80 22 29 27 13 19 0 0   21 1.29 3.07 345.1 -1.76 -0.27 20.7 81 21 29 27 21 17 0 0   22 1.35 1.39 326.0 -1.23 -0.10 16.5 78 15 18 15 14 23 0 0   23 1.75 2.38 339.6 -1.52 -0.13 17.2 75 17 20 14 12 24 0 0   24 1.95 2.72 359.1 -1.86 -0.24 20.5 76 20 25 21 11 22 1 0   25 1.93 1.93 385.1 -1.80 -0.32 20.7 79 21 22 20 11 17 1 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.