PDBsum entry 8ybe Go to PDB code:  Tunnel analysis for: 8ybe calculated with MOLE 2.0 PDB id 8ybe Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.33 3.68 22.1 -1.56 0.11 14.6 71 1 4 2 2 6 0 0  GLC 1 B GLC 2 B 2 2.37 3.72 22.6 -2.10 0.00 22.5 73 2 5 3 2 5 0 0  GLC 1 B GLC 2 B 3 1.17 1.46 17.2 0.79 0.17 4.0 78 1 0 0 6 0 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.