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PDBsum entry 8y1d
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Pore analysis for: 8y1d calculated with  MOLE 2.0
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PDB id
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8y1d
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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35 pores,
coloured by radius |
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21 pores,
coloured by radius
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21 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.21 |
1.26 |
44.0 |
-0.04 |
0.05 |
10.2 |
78 |
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2 |
1 |
4 |
4 |
2 |
0 |
2 |
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NAG 2002 C
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2 |
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1.81 |
4.15 |
62.7 |
-0.38 |
-0.01 |
9.3 |
78 |
4 |
3 |
5 |
5 |
6 |
2 |
0 |
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3 |
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1.21 |
2.82 |
79.4 |
-2.06 |
-0.28 |
22.5 |
76 |
7 |
5 |
8 |
3 |
4 |
8 |
0 |
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4 |
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2.10 |
2.26 |
87.7 |
-0.75 |
-0.14 |
8.6 |
81 |
3 |
3 |
11 |
8 |
3 |
3 |
2 |
NAG 1 N NAG 2 N
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5 |
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1.81 |
4.15 |
90.0 |
-0.41 |
0.00 |
8.6 |
76 |
4 |
2 |
9 |
9 |
8 |
2 |
2 |
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6 |
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1.16 |
2.57 |
90.6 |
-1.11 |
-0.39 |
7.5 |
83 |
4 |
2 |
13 |
3 |
6 |
4 |
0 |
NAG 2013 A
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7 |
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2.08 |
2.32 |
94.8 |
-1.07 |
-0.06 |
11.0 |
78 |
3 |
6 |
10 |
10 |
4 |
3 |
2 |
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8 |
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2.38 |
3.70 |
104.4 |
-1.49 |
-0.51 |
15.3 |
89 |
4 |
8 |
18 |
9 |
4 |
4 |
0 |
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9 |
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1.25 |
1.54 |
109.8 |
-1.49 |
-0.49 |
10.9 |
86 |
5 |
4 |
19 |
8 |
7 |
1 |
1 |
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10 |
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2.74 |
2.81 |
111.4 |
-2.19 |
-0.57 |
20.6 |
86 |
11 |
6 |
19 |
3 |
3 |
3 |
0 |
NAG 2013 A
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11 |
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1.19 |
1.26 |
114.8 |
-1.11 |
-0.19 |
21.6 |
76 |
8 |
7 |
5 |
8 |
5 |
0 |
2 |
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12 |
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1.32 |
1.31 |
117.5 |
-1.50 |
-0.34 |
20.9 |
79 |
7 |
5 |
6 |
5 |
5 |
1 |
0 |
NAG 2002 C
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13 |
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1.36 |
1.38 |
130.4 |
-1.29 |
-0.23 |
18.0 |
82 |
10 |
4 |
11 |
6 |
5 |
1 |
2 |
NAG 2005 B NAG 1 J NAG 2 J NAG 1 L NAG 2 L
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14 |
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2.80 |
2.81 |
159.3 |
-2.05 |
-0.57 |
18.4 |
87 |
14 |
10 |
26 |
5 |
6 |
2 |
0 |
NAG 2013 B
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15 |
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1.14 |
2.43 |
167.4 |
-1.59 |
-0.38 |
12.9 |
82 |
12 |
5 |
24 |
9 |
11 |
9 |
0 |
NAG 2013 B
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16 |
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1.26 |
2.58 |
177.5 |
-1.61 |
-0.44 |
11.8 |
85 |
11 |
6 |
30 |
12 |
9 |
11 |
0 |
NAG 2013 C
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17 |
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2.31 |
3.03 |
177.1 |
-2.14 |
-0.60 |
18.5 |
87 |
13 |
11 |
30 |
9 |
5 |
7 |
0 |
NAG 2013 C
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18 |
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1.91 |
4.19 |
195.6 |
-1.53 |
-0.45 |
15.2 |
85 |
17 |
10 |
29 |
9 |
11 |
6 |
0 |
NAG 2013 C
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19 |
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1.10 |
2.55 |
219.4 |
-1.14 |
-0.32 |
10.6 |
83 |
15 |
6 |
34 |
12 |
15 |
11 |
0 |
NAG 2013 C NAG 1 N NAG 2 N NAG 1 O NAG 2 O
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20 |
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1.56 |
2.25 |
92.3 |
-1.68 |
-0.26 |
19.8 |
80 |
6 |
5 |
5 |
5 |
3 |
2 |
0 |
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21 |
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1.32 |
2.73 |
37.8 |
1.53 |
0.83 |
2.8 |
67 |
1 |
0 |
3 |
7 |
5 |
0 |
3 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program